DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and Ushbp1

DIOPT Version :10

Sequence 1:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001028859.1 Gene:Ushbp1 / 290629 RGDID:1310859 Length:680 Species:Rattus norvegicus


Alignment Length:471 Identity:82/471 - (17%)
Similarity:143/471 - (30%) Gaps:149/471 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 LDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGS----- 343
            |.||.|....:.::.|:.:..::  .:|    ||..:||.......|..:  ::....||     
  Rat    17 LPGELDPVAESSEEVDTTNGSFE--TKP----ELLQEHLGPSLQGPGNRI--KEDCDVGSHGVLP 73

  Fly   344 -AYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKC 407
             :.|:..:.::.|....|:.|..|.|.::|.|:                         |....||
  Rat    74 LSPEERREPEVEAHQALQEAPLDTGPAEITAPN-------------------------VYETLKC 113

  Fly   408 NGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACKHNTAGPEC 472
            ...:.|.|.........:.|...:.:|.| |.||   ..||...:.|              ||..
  Rat   114 RLSSLEAVVAAWRRHSLSFSKPVEAEDRD-PGAP---GSFGNEEEAS--------------GPGQ 160

  Fly   473 ERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYC 537
            :....|.....|.|.......|                 ||.:....:...   ..:::|..|..
  Rat   161 QEAAHFIERNAWLRLALGTREE-----------------ELARTQASLQDA---QAENETLQRQV 205

  Fly   538 HYCREGYYR-DATKPPNHRKVCKRCD-------------------CHPV------GSTGKTCNHL 576
            ....:...: :|:.||:..:..:|..                   .||.      .|:.::...|
  Rat   206 QELEDSLMQLEASPPPSMLRAGRRNSNSSSSGAERRPWAPQDSPMAHPFLQRLRSDSSTQSFGCL 270

  Fly   577 SGQCPCKE-------------GVTGLTC-------------NRC--------ARGYQQTRSHVA- 606
            |.|.|..|             .:..|.|             .||        .|..:.|..|:| 
  Rat   271 STQRPSPEMYLMEDQMGQLQGNIEKLKCFNRLLLAVLQGYKGRCESLSIKLGKREAEATALHLAL 335

  Fly   607 ----PCIKVPTNANMIQAESAGGGGGGGTGDYK--DGGGSQVEEMKKYCGKCKA---SPKKLNLN 662
                .|.:|......::....|.|.|...||.:  :...|::...|:.....|.   ||:..:::
  Rat   336 QYSKDCEEVYEVLLALKTAGLGAGVGATNGDLQAAEKEASRLLVKKEVAMDVKTPQPSPEGSSVD 400

  Fly   663 KFCMEDYAILAKVIGH 678
            |...|:.|  |::.|:
  Rat   401 KPTPEELA--AQLHGY 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_511155.1 LamNT 37..261 CDD:214532
EGF_Lam <458..484 CDD:238012 3/25 (12%)
EGF_Lam 498..555 CDD:238012 7/57 (12%)
EGF_Lam 560..608 CDD:238012 17/111 (15%)
NTR_netrin-1_like 661..791 CDD:239634 5/18 (28%)
Ushbp1NP_001028859.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..101 19/91 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 135..162 10/44 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..250 4/32 (13%)
MCC-bdg_PDZ 288..351 CDD:463122 10/62 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 524..562
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.