DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and Ush2a

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001289148.1 Gene:Ush2a / 289369 RGDID:628777 Length:5191 Species:Rattus norvegicus


Alignment Length:632 Identity:130/632 - (20%)
Similarity:203/632 - (32%) Gaps:261/632 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 VQASSVCGAQQP------ERYCELLRDGNAGECRSCEQQRYGPAA--LTDLNNPSNVTCWRSGAV 112
            :|:...|....|      ::||  :.:| ..:.......|..|.|  |:.:|:....|.|     
  Rat   294 IQSHCRCPGSHPRVHPSVQQYC--IPNG-VEDTLQHRVSRLNPEAHPLSFINDDDVATSW----- 350

  Fly   113 NVPHDPDSAPPDNVTLTLSL---GKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYS 174
             :.|........|..:.:|:   ..:|::..|::.|  .||:|.::.|.:.......|:.:|:::
  Rat   351 -ISHVFTDITQLNQGVAISIDLENGQYQVFQITIRF--SSPQPVAMRIQRKKADKSLWEDWQYFA 412

  Fly   175 SQCQKFYGRPDRAKISKFNEQEARCINSQHDTGGAAQRFAFNTL----EGRPSANDLDSSLVLQD 235
            ..| ..:|..:...:.  |.....|:........:.....|:.|    :.||...|..:|.:||:
  Rat   413 RNC-SVWGMKNNGDLE--NPNSVNCLQFPDFIPFSHGNVTFDLLTSGQKHRPGDYDFYNSSLLQE 474

  Fly   236 WVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDS 300
            ::|||.||:.|..|..|..                                              
  Rat   475 FMTATQIRLYFRGLFYPAW---------------------------------------------- 493

  Fly   301 ADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKV 365
                         | .:|..|                                            
  Rat   494 -------------H-TVDSRH-------------------------------------------- 500

  Fly   366 TPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQD 430
                                      ::|||.:..:.|||:|:|||..|..|             
  Rat   501 --------------------------RYYAVDEITIIGRCQCHGHAETCDRT------------- 526

  Fly   431 DGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACK-HN-TAGPECERCKPFYFDRPWGRATDNDAN 493
                                     :....|.|. |: |.||:|.||.|.|.|:|:.......|.
  Rat   527 -------------------------RRPYQCLCSPHSFTEGPQCGRCSPLYNDKPFRSGNKVHAF 566

  Fly   494 ECKMCQCNGHARRCRF--NLELYKLS-GRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHR 555
            .||.|||:|||..|.:  :::.:.|. .|..||||.:|||.||||.|..|::.:||.....|...
  Rat   567 NCKPCQCHGHASSCHYDASMDPFPLEYNRGGGGVCDDCQHHTTGRNCESCQDYFYRPIGADPADP 631

  Fly   556 KVCKRCDCHPVGS--------------------TGK----------------------------- 571
            :|||.|||:..|:                    :|:                             
  Rat   632 EVCKHCDCNRDGTRNGSLLCDLVGGQCDCKRRVSGRRCFRCHIGFYGLQALDPDGCRPCDCNPSG 696

  Fly   572 ------TCNHLSGQCPCKEGVTGLTCNRCARGYQQTRSHVA----PC 608
                  ||:|.||||.||..|.||.|:||:.|::..||..|    ||
  Rat   697 TVDGDITCHHNSGQCSCKANVIGLRCDRCSFGFKFLRSLNADGCEPC 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 45/219 (21%)
EGF_Lam <458..484 CDD:238012 12/27 (44%)
EGF_Lam 498..555 CDD:238012 25/59 (42%)
EGF_Lam 560..608 CDD:238012 24/106 (23%)
NTR_netrin-1_like 661..791 CDD:239634
Ush2aNP_001289148.1 LamGL 144..279 CDD:214722
Laminin_N 312..512 CDD:295486 48/343 (14%)
Laminin_EGF 514..561 CDD:278482 20/84 (24%)
EGF_Lam 570..635 CDD:238012 26/64 (41%)
EGF_Lam 637..688 CDD:238012 5/50 (10%)
Laminin_EGF 690..740 CDD:278482 19/49 (39%)
EGF_Lam 742..787 CDD:238012 2/2 (100%)
Laminin_EGF 791..840 CDD:278482
Laminin_EGF 843..893 CDD:278482
EGF_Lam 895..944 CDD:238012
EGF_Lam 946..996 CDD:238012
EGF_Lam 997..>1034 CDD:238012
fn3 1054..1127 CDD:278470
FN3 1152..1234 CDD:238020
FN3 1238..1350 CDD:238020
FN3 1361..1444 CDD:214495
Laminin_G_2 1540..1668 CDD:280389
LamG 1706..1856 CDD:238058
FN3 1946..2041 CDD:238020
FN3 2044..2125 CDD:238020
FN3 2133..2223 CDD:238020
FN3 2231..2303 CDD:238020
FN3 2319..2418 CDD:238020
FN3 2422..2518 CDD:238020
FN3 2530..2608 CDD:238020
FN3 2610..2708 CDD:238020
FN3 2713..2788 CDD:238020
FN3 2810..2909 CDD:238020
FN3 2914..3004 CDD:238020
FN3 <3439..3484 CDD:238020
FN3 3487..3564 CDD:238020
FN3 3584..3662 CDD:238020
FN3 3670..3748 CDD:238020
FN3 3762..3852 CDD:238020
FN3 3865..3950 CDD:238020
FN3 3954..4051 CDD:238020
FN3 4151..4248 CDD:238020
FN3 4258..4341 CDD:238020
FN3 4346..4418 CDD:238020
FN3 4433..4517 CDD:238020
FN3 4519..4617 CDD:238020
FN3 4643..4710 CDD:238020
FN3 4722..4798 CDD:238020
FN3 4815..4916 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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