DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and lamb1a

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_775382.1 Gene:lamb1a / 286830 ZFINID:ZDB-GENE-021226-1 Length:1785 Species:Danio rerio


Alignment Length:647 Identity:153/647 - (23%)
Similarity:237/647 - (36%) Gaps:207/647 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DPCYFEGKPRKCLPSFVNAAYGNPVQ--ASSVCGAQQPERYCELLRDGNAGECRSCE-QQRYGPA 93
            |.| .||   .|.|:..:...|...|  |:|.||..:||.:|.:.......:|..|: :|.|...
Zfish    24 DVC-TEG---SCYPATGDLLIGRAQQLLATSTCGVHKPEPFCIVSHLQEEKKCFVCDSRQAYNET 84

  Fly    94 A--LT--DLNN------PSNVTCWRSGAVNVPHDPDSAPPDNVTLTLSLGKKYELTYISLSFCPR 148
            |  :|  .:.|      |:.:..|......:         :|||:.|.|..::..|::.::|  :
Zfish    85 AHQVTSHSIENVVTTFAPNRLKTWWQSENGL---------ENVTIQLDLEAEFHFTHLIMTF--K 138

  Fly   149 SPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKISKFNEQ--EARCINSQHDTGGAAQ 211
            :.||.::.|.:|:|||.|||.:::::..|:..:.......::|.::.  :.|..:.:..|.|   
Zfish   139 TFRPAAMVIERSADFGNTWQVYRYFAYDCESSFPSVSHGPMTKVDDVICDTRYSDIEPSTEG--- 200

  Fly   212 RFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGSREEDE 276
            ...|..|:......|..|..: |:.:..|::||.|.:|                           
Zfish   201 EVIFRVLDPAFRIEDPYSPRI-QNMLKITNLRVKFTKL--------------------------- 237

  Fly   277 DDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHK 341
                            :.|.||                  |.|..:.:.                
Zfish   238 ----------------HTLGDN------------------LLDSRIEIK---------------- 252

  Fly   342 GSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAVGGRCK 406
                ||:|                                            ||:.|..|.|.|.
Zfish   253 ----EKYY--------------------------------------------YAIYDMVVRGNCF 269

  Fly   407 CNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACKHNTAGPE 471
            |.||||||...  .|:|.|:.....|.                           |.|.|||.|..
Zfish   270 CYGHASECAPV--DGTGEAVEGMVHGH---------------------------CMCNHNTIGLN 305

  Fly   472 CERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRY 536
            ||||:.||.|.||..|...:.|.||.|.||.|:..|.|::.:|:.||.||||||.:|||:|.|..
Zfish   306 CERCQDFYHDLPWRPAEGRNTNACKKCHCNHHSHSCHFDMAVYRASGNVSGGVCDDCQHNTMGHN 370

  Fly   537 CHYCREGYYRDATKPPNHRKVCKRCDCHPVGS-TGKTCNH--------LSGQCPCKEGVTGLTCN 592
            |..|:..:::...|......:|:.|:|.|||| .|..|:.        :||||.||..|.|..|:
Zfish   371 CEQCKPFFHQHPEKDIRDPNICEPCNCDPVGSLNGGVCDPMTDVSLGLISGQCRCKPNVEGERCD 435

  Fly   593 RCARGYQQTRSHVAPCIKVPTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEM--KKYCGKC 652
            :|.:|:.........|  .|...|.:      |...||:....|.|....:.:  .:.|.:|
Zfish   436 QCKQGHYGLSEDPLGC--QPCTCNAL------GTVPGGSPCDTDSGNCYCKRLVTGRNCDQC 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 54/238 (23%)
EGF_Lam <458..484 CDD:238012 13/25 (52%)
EGF_Lam 498..555 CDD:238012 23/56 (41%)
EGF_Lam 560..608 CDD:238012 19/56 (34%)
NTR_netrin-1_like 661..791 CDD:239634
lamb1aNP_775382.1 Laminin_N 40..266 CDD:278484 62/365 (17%)
EGF_Lam 268..320 CDD:238012 27/80 (34%)
Laminin_EGF <353..382 CDD:278482 13/28 (46%)
EGF_Lam 394..452 CDD:238012 20/59 (34%)
EGF_Lam 453..504 CDD:238012 9/43 (21%)
EGF_Lam 505..548 CDD:238012
CBM6-CBM35-CBM36_like 552..>612 CDD:301364
EGF_Lam 769..814 CDD:214543
Laminin_EGF 817..865 CDD:278482
EGF_Lam 862..907 CDD:238012
Laminin_EGF <934..969 CDD:278482
Laminin_EGF 972..1018 CDD:278482
Laminin_EGF 1024..1078 CDD:278482
Laminin_EGF 1081..1129 CDD:278482
Laminin_EGF 1129..>1168 CDD:278482
Apolipoprotein 1246..1393 CDD:279749
SynN 1256..>1374 CDD:294095
COG1340 1441..1730 CDD:224259
MCP_signal 1448..1630 CDD:304920
NusB_Sun 1530..>1611 CDD:294154
Uso1_p115_C 1672..1774 CDD:282695
IncA <1697..>1774 CDD:282066
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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