DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and epi-1

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001294008.1 Gene:epi-1 / 177956 WormBaseID:WBGene00001328 Length:3715 Species:Caenorhabditis elegans


Alignment Length:737 Identity:156/737 - (21%)
Similarity:232/737 - (31%) Gaps:320/737 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 PSFVNAAYGNPVQASSVCGAQQ----PERYCEL------------------------------LR 75
            ||.:..::..|:.|:|.||..|    .|.||.|                              :|
 Worm    32 PSQITISHRKPITATSTCGEIQGQPVTEIYCSLTGSTQYTPLNSYSYQDDEQQKSWSQYENPMVR 96

  Fly    76 DGN-AGECRSCEQQRYGPAALTDLNNPSNVTCWRSGAVNVPHDPDSAPP-------DNVTLTLSL 132
            .|: .|.|.:..:..:..|.:.|.||    :.|.|            ||       :.|.:|:.|
 Worm    97 GGHGCGHCNAGNENSHPAANMVDGNN----SWWMS------------PPLSRGLQHNEVNITIDL 145

  Fly   133 GKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQP-FQF--YSSQCQKFYGRPDRAKISKFNE 194
            .:::.:.|:.:... .||||.|..:.:|:|.|:|:|| |.|  .:::|.:.:|....:.||:.:.
 Worm   146 EQEFHVAYVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDS 209

  Fly   195 QEARCINSQHDTGGAA------QRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPP 253
            ...|       |..|:      .......||.|||:....:|..||::..||::|:         
 Worm   210 VTCR-------TDMASLQPLENAEMVIRILEHRPSSRQFATSEALQNFTRATNVRL--------- 258

  Fly   254 QLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELD 318
            :||             |:|          .|.|       :|.|       .:|:.:|       
 Worm   259 RLL-------------GTR----------TLQG-------HLMD-------MNEWRDP------- 279

  Fly   319 DDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAA 383
                         :|.:|                                               
 Worm   280 -------------TVTRR----------------------------------------------- 284

  Fly   384 SAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFG 448
                    ..||:.:..:||||.|||||..|                   |...|..|.      
 Worm   285 --------YFYAIKEIMIGGRCVCNGHAVTC-------------------DILEPQRPK------ 316

  Fly   449 RSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLE- 512
                     ::.|.|:|||.|..||||.|.:..:.|..||.::...|:.|.|.|.:..|.::.| 
 Worm   317 ---------SLLCRCEHNTCGDMCERCCPGFVQKQWQAATAHNNFTCEACNCFGRSNECEYDAEV 372

  Fly   513 -LYKLS-----GRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHP------ 565
             |.|.|     ....||||.||:.:|.|..|:.|..||:|......|..:.||.|||.|      
 Worm   373 DLNKQSIDSQGNYEGGGVCKNCRENTEGVNCNKCSFGYFRPEGVTWNEPQPCKVCDCDPDKHTGA 437

  Fly   566 ---------------------------------------VGSTGKTCNHLSGQCPCKEGVTGLTC 591
                                                   .|:.|..|....||||||.|..|..|
 Worm   438 CAEETGKCECLPRFVGEDCDQCASGYYDAPKCKPCECNVNGTIGDVCLPEDGQCPCKAGFGGTFC 502

  Fly   592 NRCARGYQQTRSHVAPCIKVPTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKYCGKCKASP 656
            ..||.||....:....|:                         .|..||:........|:|:..|
 Worm   503 ETCADGYTNVTAGCVECV-------------------------CDATGSEHGNCSASTGQCECKP 542

  Fly   657 KKLNLN-------------KFC 665
            ....|:             |||
 Worm   543 AYAGLSCDKCQVGYFGDDCKFC 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 61/266 (23%)
EGF_Lam <458..484 CDD:238012 11/25 (44%)
EGF_Lam 498..555 CDD:238012 22/63 (35%)
EGF_Lam 560..608 CDD:238012 20/92 (22%)
NTR_netrin-1_like 661..791 CDD:239634 4/18 (22%)
epi-1NP_001294008.1 LamNT 24..296 CDD:214532 73/408 (18%)
EGF_Lam 297..345 CDD:238012 23/81 (28%)
Laminin_EGF 427..474 CDD:278482 4/46 (9%)
EGF_Lam 471..520 CDD:238012 16/48 (33%)
EGF_Lam 519..564 CDD:214543 9/69 (13%)
Laminin_EGF 564..612 CDD:278482 1/1 (100%)
Laminin_EGF 610..658 CDD:278482
Laminin_EGF 656..703 CDD:278482
Laminin_EGF 701..753 CDD:278482
Laminin_EGF 756..806 CDD:278482
EGF_Lam 808..854 CDD:238012
CBM6-CBM35-CBM36_like 855..988 CDD:271143
EGF_Lam 1425..1468 CDD:238012
EGF_Lam 1472..1515 CDD:238012
Laminin_EGF 1517..1567 CDD:278482
Laminin_EGF 1565..1613 CDD:278482
LamB 1669..1793 CDD:214597
EGF_Lam 1840..1883 CDD:238012
Laminin_EGF 1891..1945 CDD:278482
EGF_Lam 1947..1998 CDD:238012
EGF_Lam 2001..2045 CDD:214543
EGF_Lam 2048..2092 CDD:214543
EGF_Lam 2095..2140 CDD:214543
Tar <2145..2378 CDD:223910
BAR 2289..2486 CDD:299863
Apolipoprotein 2289..2472 CDD:279749
COG1340 2414..2690 CDD:224259
ApoLp-III_like 2510..2635 CDD:304399
Laminin_II 2589..2730 CDD:283628
LamG 2704..2875 CDD:238058
LamG 2909..3057 CDD:238058
LamG 3353..3510 CDD:238058
LamG 3532..3682 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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