DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and lam-1

DIOPT Version :10

Sequence 1:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_500734.3 Gene:lam-1 / 177292 WormBaseID:WBGene00002247 Length:1790 Species:Caenorhabditis elegans


Alignment Length:38 Identity:12/38 - (31%)
Similarity:20/38 - (52%) Gaps:0/38 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 NYELRIAGGAVRDLLMNIRPADVDFASTATPTQMKEMF 72
            |:.|.:|..::|....|:||....|:||.:|...:..|
 Worm     2 NHLLILARNSLRRRNFNLRPPSRSFSSTISPESNRSSF 39

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_511155.1 LamNT 37..261 CDD:214532 11/36 (31%)
EGF_Lam <458..484 CDD:238012
EGF_Lam 498..555 CDD:238012
EGF_Lam 560..608 CDD:238012
NTR_netrin-1_like 661..791 CDD:239634
lam-1NP_500734.3 LamNT 31..273 CDD:214532 2/9 (22%)
EGF_Lam 274..332 CDD:238012
EGF_Lam 344..396 CDD:238012
Laminin_EGF 407..464 CDD:395007
EGF_Lam 466..516 CDD:238012
EGF_Lam 517..>556 CDD:238012
EGF_Lam 779..824 CDD:214543
Laminin_EGF 827..876 CDD:395007
Laminin_EGF 874..913 CDD:395007
Laminin_EGF 924..983 CDD:395007
EGF_Lam 985..1030 CDD:238012
Laminin_EGF 1038..1086 CDD:395007
EGF_Lam 1088..1144 CDD:238012
EGF_Lam 1145..1193 CDD:238012
PRK03918 1233..>1782 CDD:235175
Blue background indicates that the domain is not in the aligned region.

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