DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and Lamb1

DIOPT Version :10

Sequence 1:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_032508.3 Gene:Lamb1 / 16777 MGIID:96743 Length:1786 Species:Mus musculus


Alignment Length:813 Identity:177/813 - (21%)
Similarity:287/813 - (35%) Gaps:261/813 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 MGLLLPI---ILALAIGSSAAGISSNDPCYFEG-KPRKCLPSFVNAAYG--NPVQASSVCGAQQP 67
            ||||...   :|||    ....:.:.:|.:..| ....|.|:..:...|  ..:..:|.||..:|
Mouse     1 MGLLQVFAFGVLAL----WGTRVCAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKP 61

  Fly    68 ERYCELLRDGNAGECRSCE-QQRYGPAALTD---LNN------PSNVTCWRSGAVNVPHDPDSAP 122
            |.||.:.......:|..|: :..|......|   :.|      |:.:..|......|        
Mouse    62 EPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGV-------- 118

  Fly   123 PDNVTLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRA 187
             :|||:.|.|..::..|::.::|  ::.||.::.|.:|||||:.|..:::::..|:..:......
Mouse   119 -ENVTIQLDLEAEFHFTHLIMTF--KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTG 180

  Fly   188 KISKFNE--QEARCINSQHDTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLE 250
            .:.|.::  .::|..:.:..|.|   ...|..|:......|..|..: |:.:..|::|:.|.:| 
Mouse   181 PMKKVDDIICDSRYSDIEPSTEG---EVIFRALDPAFKIEDPYSPRI-QNLLKITNLRIKFVKL- 240

  Fly   251 LPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHL 315
                                                      :.|.||                 
Mouse   241 ------------------------------------------HTLGDN----------------- 246

  Fly   316 ELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPS 380
             |.|..:.:                    .||:|                               
Mouse   247 -LLDSRMEI--------------------REKYY------------------------------- 259

  Fly   381 AAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLAN 445
                         |||.|..|.|.|.|.||||||...             ||.:|:...  .:..
Mouse   260 -------------YAVYDMVVRGNCFCYGHASECAPV-------------DGVNEEVEG--MVHG 296

  Fly   446 HFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFN 510
            |              |.|:|||.|..||.|..||.|.||..|...::|.||.|.||.|:..|.|:
Mouse   297 H--------------CMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFD 347

  Fly   511 LELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVGS-TGKTCN 574
            :.::..:|.||||||.||||:|.||.|..|:..|::...:......:|:.|.|.|.|| .|..|:
Mouse   348 MAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICD 412

  Fly   575 H--------LSGQCPCKEGVTGLTCNRCARGYQQTRSHVAPCIKVPTNANMIQAESAGGGGGGGT 631
            .        ::|||.||..|.|..|:.|..|:....:      :.|...........|...||..
Mouse   413 GYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA------EDPYGCKSCACNPLGTIPGGNP 471

  Fly   632 GDYKDG--------GGSQVEE-MKKYCG------KCKASPKKLN--LNKFCMED---YAILAKVI 676
            .|.:.|        .|.:.:: :.::.|      .|:.....|.  ||..|.||   .:.|..:|
Mouse   472 CDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMI 536

  Fly   677 GHDRASQDISTEKFSIERQNEIYKYEINIQTIFKRNPMSGTTSSLLGRGNMMLLVPRKSIECQCP 741
            |  |...::.:..:.....:.||:.|                .:.||.|  :::|.|:.|:.:.|
Mouse   537 G--RQCNEVESGYYFTTLDHYIYEAE----------------EANLGPG--VIVVERQYIQDRIP 581

  Fly   742 KIKLNKSYLILGRDSEAAPGYLAIGPSSVVLEW 774
                          |...||::.: |....||:
Mouse   582 --------------SWTGPGFVRV-PEGAYLEF 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_511155.1 LamNT 37..261 CDD:214532 49/238 (21%)
EGF_Lam <458..484 CDD:238012 12/25 (48%)
EGF_Lam 498..555 CDD:238012 23/56 (41%)
EGF_Lam 560..608 CDD:238012 17/56 (30%)
NTR_netrin-1_like 661..791 CDD:239634 25/117 (21%)
Lamb1NP_032508.3 Laminin_N 35..269 CDD:459653 61/373 (16%)
EGF_Lam 271..323 CDD:238012 26/80 (33%)
EGF_Lam 335..387 CDD:238012 23/51 (45%)
Laminin_EGF 398..455 CDD:395007 18/62 (29%)
EGF_Lam 457..508 CDD:238012 7/50 (14%)
EGF_Lam 509..>548 CDD:238012 10/40 (25%)
EGF_Lam 773..818 CDD:214543
Laminin_EGF 821..869 CDD:395007
EGF_Lam 866..911 CDD:238012
Laminin_EGF 917..973 CDD:395007
Laminin_EGF 976..1020 CDD:395007
Laminin_EGF 1028..1082 CDD:395007
Laminin_EGF 1084..1132 CDD:395007
Laminin_EGF 1132..>1171 CDD:395007
Domain II 1179..1397
YhaN 1188..>1675 CDD:443752
Domain alpha 1398..1430
Domain I 1431..1786
SMC_prok_B 1456..>1776 CDD:274008
cc_LAMB1_C 1714..1786 CDD:411971
Blue background indicates that the domain is not in the aligned region.

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