DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and Lama2

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_032507.2 Gene:Lama2 / 16773 MGIID:99912 Length:3118 Species:Mus musculus


Alignment Length:710 Identity:159/710 - (22%)
Similarity:250/710 - (35%) Gaps:239/710 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GLLLPIILALAIGSSAAGISSNDPCYFEGKPRKCLPSFVNAAYGNPVQASSVCGAQQPERYCELL 74
            |:||.::|....||......|.     ..:.|...|:.:|.|....:..::.||.:.||.||:|:
Mouse     7 GILLLLLLGTLEGSQTQRRQSQ-----AHQQRGLFPAVLNLASNALITTNATCGEKGPEMYCKLV 66

  Fly    75 -----RDGNAGECRSCEQQRYGPAALTDLNN--PSNVTCWRSGAVNVPHDPDSAPPDNVTLTLSL 132
                 :.....:||.|.|....|.....:.|  ....|.|:|     |...:......||:||.|
Mouse    67 EHVPGQPVRNPQCRICNQNSSNPYQRHPITNAIDGKNTWWQS-----PSIKNGVEYHYVTITLDL 126

  Fly   133 GKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYS---SQCQKFY------GRPDRAK 188
            .:.:::.|:.:. ...||||.:..:.:|.| ...::|:|:::   ::|...|      |.|..||
Mouse   127 QQVFQIAYVIVK-AANSPRPGNWILERSLD-DVEYKPWQYHAVTDTECLTLYNIYPRTGPPSYAK 189

  Fly   189 ISKFNEQEARCINSQH-----DTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHR 248
                 :.|..|.:...     :.|    ....:.:.|||||:|....|:  ::.:|..||:.|.|
Mouse   190 -----DDEVICTSFYSKIHPLENG----EIHISLINGRPSADDPSPELL--EFTSARYIRLRFQR 243

  Fly   249 LELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKK 313
                     ::..|                 |||.:...:|                     |: 
Mouse   244 ---------IRTLN-----------------ADLMMFAHKD---------------------PR- 260

  Fly   314 HLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAA 378
              |:|             .:|.|:                                         
Mouse   261 --EID-------------PIVTRR----------------------------------------- 269

  Fly   379 PSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSL 443
                         .:|:|.|.:|||.|.|.|||..|                       |..|  
Mouse   270 -------------YYYSVKDISVGGMCICYGHARAC-----------------------PLDP-- 296

  Fly   444 ANHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCR 508
                  :|..|     .|.|:|||.|..|:||.|.:..:||...|....:||:.|.|:|.|..|.
Mouse   297 ------ATNKS-----RCECEHNTCGESCDRCCPGFHQKPWRAGTFLTKSECEACNCHGKAEECY 350

  Fly   509 F-------NLELYKLSGR-VSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHP 565
            :       ||.| .:.|: :.||||.||.|:|.|..|..|.:|::|.....||:.:.|:.|.|.|
Mouse   351 YDETVASRNLSL-NIHGKYIGGGVCINCTHNTAGINCETCVDGFFRPKGVSPNYPRPCQPCHCDP 414

  Fly   566 VGSTGKTC---------NHLSGQCPCKEGVTGLTCNRCARGYQ------------QTRSHVAPCI 609
            .||..:.|         ....|.|.||.|..|:.|:||.|||.            ...::..||:
Mouse   415 TGSLSEVCVKDEKYAQRGLKPGSCHCKTGFGGVNCDRCVRGYHGYPDCQPCNCSGLGSTNEDPCV 479

  Fly   610 KVPTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKYCGKCKASPKKLNLNKFCMEDY 669
            ...:....::.|..        ...|.|..:..|:.:|.|.:|..|    .::..|...|
Mouse   480 GPCSCKENVEGEDC--------SRCKSGFFNLQEDNQKGCEECFCS----GVSNRCQSSY 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 56/244 (23%)
EGF_Lam <458..484 CDD:238012 10/25 (40%)
EGF_Lam 498..555 CDD:238012 24/64 (38%)
EGF_Lam 560..608 CDD:238012 18/68 (26%)
NTR_netrin-1_like 661..791 CDD:239634 2/9 (22%)
Lama2NP_032507.2 Laminin_N 45..281 CDD:278484 66/370 (18%)
EGF_Lam 283..330 CDD:238012 22/82 (27%)
Laminin_EGF 410..467 CDD:278482 18/56 (32%)
Laminin_EGF 465..511 CDD:278482 7/53 (13%)
Laminin_B 579..707 CDD:278481
EGF_Lam 752..801 CDD:238012
EGF_Lam 802..859 CDD:238012
EGF_Lam 860..912 CDD:238012
EGF_Lam 913..960 CDD:238012
EGF_Lam 963..1007 CDD:214543
EGF_Lam 1009..1054 CDD:238012
Laminin_EGF 1056..1104 CDD:278482
Laminin_EGF 1102..1159 CDD:278482
LamB 1225..1360 CDD:214597
EGF_Lam <1375..1403 CDD:238012
Laminin_EGF 1416..1462 CDD:278482
Laminin_EGF 1465..1520 CDD:278482
EGF_Lam 1523..>1560 CDD:238012
Domain II and I 1570..2140
Laminin_I 1584..1848 CDD:283627
SPEC 1682..1881 CDD:295325
Apolipoprotein 1845..2059 CDD:279749
Apolipoprotein 2014..2152 CDD:279749
Laminin_II 2033..2168 CDD:283628
Laminin_G_1 2170..2310 CDD:278483
Laminin_G_1 2364..2503 CDD:278483
LamG 2524..2686 CDD:238058
Laminin_G_1 2789..2917 CDD:278483
LamG 2937..3089 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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