DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and Lama5

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001178538.1 Gene:Lama5 / 140433 RGDID:621023 Length:3713 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532
EGF_Lam <458..484 CDD:238012
EGF_Lam 498..555 CDD:238012
EGF_Lam 560..608 CDD:238012
NTR_netrin-1_like 661..791 CDD:239634
Lama5NP_001178538.1 Laminin_N 58..302 CDD:278484
EGF_Lam 303..351 CDD:238012
EGF_Lam 362..425 CDD:238012
EGF_Lam 432..473 CDD:238012
EGF_Lam 499..546 CDD:214543
EGF_Lam 545..588 CDD:238012
Laminin_EGF 592..639 CDD:278482
Laminin_EGF 637..684 CDD:278482
EGF_Lam 681..723 CDD:238012
EGF_Lam 780..831 CDD:238012
EGF_Lam 832..>871 CDD:238012
Laminin_EGF 1442..1490 CDD:278482
Laminin_EGF 1532..1583 CDD:278482
Laminin_EGF 1581..1629 CDD:278482
LamB 1689..1818 CDD:214597
EGF_Lam 1863..>1899 CDD:238012
Laminin_EGF 1914..1967 CDD:278482
EGF_Lam 1969..2022 CDD:238012
EGF_Lam 2024..2068 CDD:214543
EGF_Lam 2070..2116 CDD:238012
EGF_Lam 2118..2168 CDD:214543
Laminin_I 2189..2448 CDD:283627
MscS_porin 2397..2617 CDD:289559
Laminin_II 2639..2760 CDD:283628
LamG 2781..2908 CDD:214598
LamG 2943..3095 CDD:238058
LamG 3151..3269 CDD:214598
LamG 3338..3490 CDD:238058
LamG 3514..3663 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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