DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and ntng2

DIOPT Version :10

Sequence 1:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_004916725.1 Gene:ntng2 / 100489740 XenbaseID:XB-GENE-6032766 Length:659 Species:Xenopus tropicalis


Alignment Length:619 Identity:143/619 - (23%)
Similarity:229/619 - (36%) Gaps:180/619 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 CGAQQPERYCE-----LLRDGNAGEC-RSCEQQRYGPAALTDLNNPSNVTCWRSGAVNVPHDPDS 120
            || ..|||:|.     |..|    || .|.....:.|:.:.|.......|.|:|  |.....|: 
 Frog    61 CG-NPPERFCTHENPYLCSD----ECDASNPDLAHPPSLMFDKEKEGLATYWQS--VTWKRYPE- 117

  Fly   121 APPDNVTLTLSLGKKYELT-YISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRP 184
              |....:|||..|..||| .|.::|  ...||.::.:.||.|:|:||.|:|:|:..|.:.:|.|
 Frog   118 --PLVANITLSWNKSLELTDDIVVTF--EYGRPTAMMLEKSLDYGRTWHPYQYYADDCMEAFGMP 178

  Fly   185 DRAKISKFNEQEAR---CINSQHDTGGAAQ----------RFA-FNTLEGRPSAN---DLDSSLV 232
            .| |:.......|.   |........|:.:          ||| |...:.|...|   .::|:..
 Frog   179 PR-KVRDLAASSANRVLCTEEYSRWAGSKKEKDVRFEVRDRFAIFAGPDLRKMENLYLRMESAKG 242

  Fly   233 LQDWVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQD 297
            |:|:.|.||:|:   ||..|              .:||:..:.|                 ||..
 Frog   243 LKDFFTLTDLRL---RLLRP--------------ALGGTYVQRE-----------------NLYK 273

  Fly   298 NDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYE-----KHYQSKLAATT 357
            ...|.:.::.....|       .:||.:..:..:..::.:.:|..:..:     |:::||...: 
 Frog   274 YFYAISNFEVVARCK-------CNLHANACNFRDGALQCECEHNTTGQDCGRCKKNFRSKSWRS- 330

  Fly   358 PPQQPPKVTPPGKVTPPSTAAPSAAASAVT-------------LPISQHYAVSDFAVGGRCKCNG 409
                       |..||....:|:|.|:|.|             |||...|..:...|        
 Frog   331 -----------GSYTPTPNGSPNACAAAGTAFGTVDPILERTDLPIIPEYTENKRVV-------- 376

  Fly   410 HAS------------------------ECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRS 450
            ..|                        |...|.:||.            :.|.:.||..|....:
 Frog   377 QMSLTPPVLDQKPKLPEKIQAAPPVLRELAVTPASGK------------KQTKTVPSPVNRQMTT 429

  Fly   451 TQMSA-KLTMTCA--------------CKH-NTAGPECERCKPFYFDRPWGRATDNDANECKMCQ 499
            |..|: |.|.|.|              .|| .||.|:    .....:....:.::........|:
 Frog   430 TPASSKKQTKTAAPSISRELPLPPASGKKHTKTAAPK----SSIPLEPSTVKVSETLGKSVTDCE 490

  Fly   500 CNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCH 564
            |.||:.||.: ::...:.      .|.:|:|:|.|::|.:||.||||:.:...:...||..|:|:
 Frog   491 CYGHSNRCSY-IDFLNVV------TCVSCKHNTRGQHCQHCRLGYYRNVSAELDDENVCIECNCN 548

  Fly   565 PVGSTGKTCNHLSGQCPCKEGVTGLTCNRCARGY 598
            .:||....||. :|.|.|::|.....|:.|..||
 Frog   549 QLGSLHDRCNE-TGYCECRKGSISPKCDECLPGY 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_511155.1 LamNT 37..261 CDD:214532 63/222 (28%)
EGF_Lam <458..484 CDD:238012 8/40 (20%)
EGF_Lam 498..555 CDD:238012 18/56 (32%)
EGF_Lam 560..608 CDD:238012 14/39 (36%)
NTR_netrin-1_like 661..791 CDD:239634
ntng2XP_004916725.1 Laminin_N 60..283 CDD:470680 69/268 (26%)
EGF_Lam 286..>323 CDD:238012 5/43 (12%)
EGF_Lam 489..531 CDD:238012 17/48 (35%)
Laminin_EGF 545..592 CDD:395007 14/38 (37%)
Blue background indicates that the domain is not in the aligned region.

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