DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and lama1

DIOPT Version :10

Sequence 1:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_004915294.2 Gene:lama1 / 100488009 XenbaseID:XB-GENE-968308 Length:3101 Species:Xenopus tropicalis


Alignment Length:693 Identity:149/693 - (21%)
Similarity:232/693 - (33%) Gaps:257/693 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LLLPIILALAIGSSAAGISSNDPCYFEGKPRKCLPSFVNAAYGNPVQASSVCGAQQPERYCELL- 74
            :|..::|.|.:|::..       |:..|    ..|:.:|.|....:..::.||...||.:|:|: 
 Frog     1 MLCRVLLFLLLGAAVR-------CHLRG----LFPAILNLASNAHISTNATCGEMGPEMFCKLVE 54

  Fly    75 ----RDGNAGECRSCEQQRYGPAALTDLNNPSNVT--CWRSGAV---NVPHDPDSAPPDNVTLTL 130
                |.....:||.|:|....|.....::|..:.|  .|:|.::   .|.|        .:|:||
 Frog    55 HVPGRPVRNPQCRICDQNSINPKERHPISNAIDGTNDWWQSPSIQNGRVYH--------WITITL 111

  Fly   131 SLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYS---SQCQKFYGRPDRAKISKF 192
            .|.:.:::.|:.:. ...||||.:..:.:|.| |..:.|:|:|:   ::|...|....|.....:
 Frog   112 DLKQVFQVAYVIIK-AANSPRPGNWILERSVD-GVEFMPWQYYAISDTECLTRYNVTPRIGPPTY 174

  Fly   193 NEQE--------ARCINSQHDTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRL 249
            ....        :|.:..:|.      ....:.:.|||||:  |.|..|.|:.:|..||:     
 Frog   175 KRDNEVICTSYYSRLVPLEHG------EIHTSLINGRPSAD--DPSPALLDFTSARYIRL----- 226

  Fly   250 ELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKH 314
                :|.:::..|                 |||.....:|     |:|.|               
 Frog   227 ----RLQRIRTLN-----------------ADLMTLSHRD-----LRDVD--------------- 250

  Fly   315 LELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAP 379
                             .:|.|:                                          
 Frog   251 -----------------PIVTRR------------------------------------------ 256

  Fly   380 SAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLA 444
                        .:|:|.|.:|||.|.|.|||..|                 ..||         
 Frog   257 ------------YYYSVKDLSVGGMCICYGHARSC-----------------PWDE--------- 283

  Fly   445 NHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRF 509
                      ..|...|.|:.||.|..|..|.|.|...||...|.:..|:|:.|.|:..|..|.:
 Frog   284 ----------VSLKFQCQCERNTCGESCNECCPGYHQNPWRPGTISVGNKCEKCNCHNKAEDCYY 338

  Fly   510 -------NLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVG 567
                   |:.|...:..:.||||.||...|.|..|..|.|||||.....|.....|..|:|...|
 Frog   339 DQGVADRNMSLNINNQYIGGGVCLNCTQFTAGINCETCIEGYYRQHKVSPYEDNPCIPCECDVFG 403

  Fly   568 STGKTC----NHLS-----GQCPCKEGVTGLTCNRCARGYQQTRSHVA------------PCIKV 611
            |....|    ||..     |||.||||.||:.|::|..|::...:.|.            ||.:.
 Frog   404 SVNSVCVVDDNHAKPGSSPGQCQCKEGYTGIKCDQCKFGFKGYPNCVRCNCSLVGSVNEDPCAEQ 468

  Fly   612 PTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKYCGKCKA 654
            ....:.::.|:                          |.:|||
 Frog   469 CVCKDNVEGEN--------------------------CDRCKA 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_511155.1 LamNT 37..261 CDD:214532 55/244 (23%)
EGF_Lam <458..484 CDD:238012 9/25 (36%)
EGF_Lam 498..555 CDD:238012 22/63 (35%)
EGF_Lam 560..608 CDD:238012 20/68 (29%)
NTR_netrin-1_like 661..791 CDD:239634
lama1XP_004915294.2 LamNT 16..268 CDD:214532 70/397 (18%)
EGF_Lam 270..317 CDD:238012 20/82 (24%)
Laminin_EGF 397..454 CDD:395007 20/56 (36%)
Laminin_EGF 452..498 CDD:395007 7/60 (12%)
Laminin_B 566..705 CDD:459652
EGF_Lam 739..787 CDD:238012
Laminin_EGF 789..844 CDD:395007
Laminin_EGF 847..891 CDD:395007
EGF_Lam 899..947 CDD:238012
EGF_Lam 949..993 CDD:214543
EGF_Lam 995..1039 CDD:238012
Laminin_EGF 1042..1090 CDD:395007
Laminin_EGF 1088..1145 CDD:395007
Laminin_B 1216..1358 CDD:459652
Laminin_EGF 1401..1447 CDD:395007
Laminin_EGF 1450..1504 CDD:395007
Laminin_EGF 1507..>1541 CDD:395007
Laminin_I 1575..1826 CDD:310534
Mplasa_alph_rch <1906..>2108 CDD:275316
Laminin_II 2035..2145 CDD:368703
LamG 2141..2281 CDD:214598
LamG 2308..2465 CDD:238058
LamG 2490..2655 CDD:238058
Laminin_G_1 2770..2898 CDD:395008
LamG 2918..3071 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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