DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and ntn4

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_031754773.1 Gene:ntn4 / 100379839 XenbaseID:XB-GENE-5823493 Length:636 Species:Xenopus tropicalis


Alignment Length:827 Identity:201/827 - (24%)
Similarity:295/827 - (35%) Gaps:288/827 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IILALAIGSSAAGISS----NDPCYFEGKPRKCLPSFVNAAYGNPVQASSVCGAQQPERYCE--- 72
            :::.|...|..||::|    ...|     .:.|.|...|.|.|..:...:.||....|..|.   
 Frog    16 LLVLLGSFSLTAGLNSMVKIGSHC-----EKACNPRMGNLAIGRSLWTETTCGHNNTELSCTYQG 75

  Fly    73 -LLRDGNAGECRSCEQQRYGPAALTDLNNPSNV----------TCWRSGAVNVPHDPDSAPPDNV 126
             :.:.....:|..|.      |||..|::|.:.          |.|:| |.::..:         
 Frog    76 YIEQTCTEPKCDKCN------AALPRLSHPPSAMADSSFKIPRTWWQS-AKDIHRE--------- 124

  Fly   127 TLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKISK 191
            .:.|.|..::..|::.:.|  :||||.::.:.:|.|||.||.|::::|..|...:...|     .
 Frog   125 VIRLDLETEFYFTHLIMVF--KSPRPAAMILERSQDFGVTWMPYKYFSINCSATFAMED-----D 182

  Fly   192 FNEQEARCINSQHD-----TGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLEL 251
            ..|:.|.| .|::.     |||   ...:.|:....||.| ..|...||.:..|::||       
 Frog   183 IQEKGALC-TSRYSHAFPCTGG---EVIYRTMSPPYSAQD-PYSKEAQDQLKITNLRV------- 235

  Fly   252 PPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLE 316
              ||||.:                                                         
 Frog   236 --QLLKQQ--------------------------------------------------------- 241

  Fly   317 LDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSA 381
                                                   ..|.|:......|...|         
 Frog   242 ---------------------------------------ACPCQEKNSDIKPQYFT--------- 258

  Fly   382 AASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANH 446
                       ||||.||.|.|.|.|||||..|||.             ||              
 Frog   259 -----------HYAVYDFIVKGSCFCNGHADHCVAA-------------DG-------------- 285

  Fly   447 FGRSTQMSAKLTMT---CACKHNTAGPECERCKPFYFDRPWGRAT--DNDANECKMCQCNGHARR 506
             .|..:.::|:.:.   |.||||||||.||.|.|.|.|:.|..|.  ..:||.||.|:|||||..
 Frog   286 -FRQVRTTSKIQVVHGRCICKHNTAGPHCEHCAPLYNDQLWEAANGKTGEANTCKKCKCNGHADS 349

  Fly   507 CRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVGST-- 569
            |.|:::::..||..:||||.||||:|.|..|..|:.|::||...|.:....||.|.|||:||.  
 Frog   350 CHFDMDVWLGSGNRTGGVCDNCQHNTEGSQCQRCKPGFFRDLKMPFSAPDACKACSCHPIGSAVL 414

  Fly   570 --GK--TCNHLSGQCPCKEGVTGLTCNRCARGYQQTRSH-VAPCIKVPTNANMIQAESAGGGGGG 629
              |.  .|:..:|.||||.||.|..|::|..||.....: ..||             ...|....
 Frog   415 PFGNITLCDPTNGDCPCKPGVAGPHCDQCMVGYWGFGEYGCRPC-------------DCAGSCDP 466

  Fly   630 GTGD-------------------YKDGGGSQVEEMK------KYCGKCKASPKKLNLNK-FCMED 668
            .|||                   |.:...|:..|.:      ::.|||:...:.|...: ||...
 Frog   467 FTGDCITNLDIDWYREFPELLSVYNESQLSRTWEDEQGFSALRHSGKCECKEQVLGKPEVFCGMK 531

  Fly   669 YAILAKV---IGHDRASQDISTEKFSIERQNEIYKYEI--NIQTIFKRNPMSGTTSSLLGRGNMM 728
            |:.:.||   ..||:.|.  :.....|::..::.|.:|  ..:|::   |.|.|     .||   
 Frog   532 YSYVLKVKILSAHDKGSH--AEVNVKIKKVLKMSKLKILRGKRTLY---PESWT-----NRG--- 583

  Fly   729 LLVPRKSIECQCPKIKLNKSYLILGRDSEAAPGYLAIGPSSVVLEWK 775
                     |.||.:.....||:.|.: :...|.|.:...|.|..||
 Frog   584 ---------CTCPILNPGLEYLVAGYE-DIRTGRLIVNMKSFVQLWK 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 59/242 (24%)
EGF_Lam <458..484 CDD:238012 15/28 (54%)
EGF_Lam 498..555 CDD:238012 26/56 (46%)
EGF_Lam 560..608 CDD:238012 20/54 (37%)
NTR_netrin-1_like 661..791 CDD:239634 29/121 (24%)
ntn4XP_031754773.1 Laminin_N 44..269 CDD:395009 69/377 (18%)
EGF_Lam 270..322 CDD:238012 27/79 (34%)
Laminin_EGF 341..394 CDD:395007 25/52 (48%)
EGF_Lam 404..455 CDD:214543 20/50 (40%)
NTR_netrin-4_like 526..634 CDD:239633 29/118 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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