DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and ushbp1

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_005155764.1 Gene:ushbp1 / 100148935 ZFINID:ZDB-GENE-121024-2 Length:649 Species:Danio rerio


Alignment Length:753 Identity:139/753 - (18%)
Similarity:223/753 - (29%) Gaps:321/753 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 LTDLNNPSNVTCWRSGAVNVPHDPDSAPPDNVTLTLSLGKKYELTYISLSFC-----PRSPR--- 151
            ::|||.       :..::.:|.:..:...:                :.:|.|     ||||.   
Zfish    29 ISDLNR-------KMDSLQIPREMKACESE----------------VQVSGCVLQQRPRSPACSL 70

  Fly   152 ------PDSL-AIFKSSDFG--QTWQPFQFYSSQCQKFYGRPDRAKISKFNEQEARCINSQHDTG 207
                  |.|: ::...|:.|  :.|...|...|..:...|:  ..|:.:........|:::|   
Zfish    71 MSVETGPASVESVCGDSEGGSSELWNRLQTLLSALETSSGQ--GKKMLRLQTHNVEAISAKH--- 130

  Fly   208 GAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAF-SDEMGGS 271
                                 .|...:.||.||.:      ||...:.|.:...:|. :||    
Zfish   131 ---------------------LSAARESWVQATQV------LEEMERDLGISYPSALPTDE---- 164

  Fly   272 REEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHL-ELDDDHLHLDYASDGESVV- 334
            |.:.:.:...|        |.:|...|.|..:..||....:|.| :|:|::..|.     |.|| 
Zfish   165 RRQYQREVLSL--------YKHNQDLNASLKSRQDELMGAEKTLVDLEDENKFLQ-----EKVVD 216

  Fly   335 -KRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSD 398
             ||:..:..|.                           :||  .:||.::|..:.|         
Zfish   217 LKRKWLYGVSC---------------------------SPP--VSPSLSSSRTSSP--------- 243

  Fly   399 FAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPS--------------------- 442
                           |.::.|......||.:......|:|..||                     
Zfish   244 ---------------CFSSPSYPGSPLLSRKLPSSRPDSPLPPSTIDSVLQAETEKMQRCLERLK 293

  Fly   443 ---------LANHFGRSTQMSAKLTMTCACKH--NTAGPECERCKPFYFDRPWGRATDNDANECK 496
                     |....|.|.|:|..|:...|...  :.|...||.|:..|.|.              
Zfish   294 ARNERLSAALVRRKGESEQLSMSLSRQEADSSALHMALAYCEECEEAYSDL-------------- 344

  Fly   497 MCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPN---HRKVC 558
                          |.||:...:         ||..|             ::|..|:   .::..
Zfish   345 --------------LSLYEARKQ---------QHAAT-------------NSTPQPDLSKSKEEN 373

  Fly   559 KRCDCH--PVGSTGKTCNHLSGQCPCKEGVTGLTCNRCARGYQQTRSHVAPCIKVPTNANMIQAE 621
            .:|:..  |.|:.....|.||.|  ..|...|:...|.:| .||.|:  |.||            
Zfish   374 SKCESSSPPEGAADARPNSLSKQ--EFEDKAGVITQRISR-LQQDRA--AVCI------------ 421

  Fly   622 SAGGGGGGGTGDYKDGGGSQVEEMKKYCGKCKASPKKLNLNKFCMEDYAILAKVIGHDRASQDIS 686
                                  ..:...|:.|.||           |...||.|.|  |||    
Zfish   422 ----------------------PQRGKAGEDKISP-----------DTGTLAGVRG--RAS---- 447

  Fly   687 TEKFSIERQNEIYKYEINIQTIFKRNPMSGTTSSLLGRGNMMLLVPRKSIECQCPKIKLNKSYLI 751
                |:.:.|:..|..:..:....|..||..      |||:.||  .|...|      |:.|.::
Zfish   448 ----SLSKNNKEEKAALRYELDTVREEMSEM------RGNLRLL--EKERRC------LDMSLMV 494

  Fly   752 LGRDSEAAPGYLAIGPSSVVLEWKDEWSLRMKRFQRRA 789
            ......|         :|::|:     |||.:..:|||
Zfish   495 QSAQDSA---------TSLILD-----SLRDELGERRA 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 29/182 (16%)
EGF_Lam <458..484 CDD:238012 7/27 (26%)
EGF_Lam 498..555 CDD:238012 8/59 (14%)
EGF_Lam 560..608 CDD:238012 15/49 (31%)
NTR_netrin-1_like 661..791 CDD:239634 32/129 (25%)
ushbp1XP_005155764.1 MCC-bdg_PDZ 284..348 CDD:287477 14/91 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3512
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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