DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetA and ntn2

DIOPT Version :9

Sequence 1:NP_001285243.1 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001032492.1 Gene:ntn2 / 641469 ZFINID:ZDB-GENE-050310-2 Length:600 Species:Danio rerio


Alignment Length:704 Identity:315/704 - (44%)
Similarity:408/704 - (57%) Gaps:142/704 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 QAPPEDPCYNKAHEPRACIPDFVNAAYDAPVVASSTCGSSGAQRYCEYQDHE-----RSCHTCDM 92
            |..|.||||.:....|.|||:|:|||:...|..||.||.. ..|.|...:.:     |:|..||.
Zfish    19 QVTPTDPCYEETGAARRCIPEFINAAFGQEVSVSSVCGRP-VSRSCSLVERDDRPAVRTCQICDA 82

  Fly    93 TDPLRSFPARSLTDLNNSNNVTCWRSEPVTGSGDNVTLTLSLGKKFELTYVILQLCPHAPRPDSM 157
            :||..:.||..|||||:::|:|||:||.:..|..|||||||||||||:|||.||.|  :|||:|:
Zfish    83 SDPRNAHPASYLTDLNSAHNLTCWQSENLQSSPLNVTLTLSLGKKFEITYVSLQFC--SPRPESL 145

  Fly   158 VIYKSTDHGLSWQPFQFFSSQCRRLFGRPARQSTGRHNEHEARCSDVTRPLV----SRIAFSTLE 218
            .||||.|:|.:|.|:||:||||||::.||.:.:..:.||.||.|:|....|.    ..||||||:
Zfish   146 AIYKSMDYGRTWTPYQFYSSQCRRMYNRPNKAAITKQNEQEALCTDGHTDLYPLSGGLIAFSTLD 210

  Fly   219 GRPSSRDLDSSPVLQDWVTATDIRVVFHRLQRPDPQALLSLEAGGATDLASGKYSVPLANGPAGN 283
            ||||.:|.|||||||||||.|||||||.|     ||...:|.       .||:.|......|   
Zfish   211 GRPSGKDFDSSPVLQDWVTVTDIRVVFSR-----PQHTRALP-------MSGRESEDALGAP--- 260

  Fly   284 NIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKCSTDASGQLNCECSHNTAGRDCERCKP 348
                   |.:.|    .:||:.||.||||||||||||:|..:..|:|.|||.|||.|.:|:||||
Zfish   261 -------GSLPT----YYYAVGDFQVGGRCKCNGHASRCVREKDGKLLCECKHNTEGPECDRCKP 314

  Fly   349 FHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCHQCKE 413
            ||:||||.|||.||||||..||||.|||:||||||:::||...|||||.||||:|.||:||.|||
Zfish   315 FHYDRPWQRATGKEANECLPCNCNLHARRCRFNMELYKLSGRKSGGVCMNCRHNTAGRHCHYCKE 379

  Fly   414 GFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPCKDGVTGLTCNRCARGYQQSRSHIAP 478
            |||||..|.:|||:.||||||||:|::||.||.|:|||||||||||:||||||:|||||||.:||
Zfish   380 GFYRDMGKAITHRRACKACDCHPVGAAGKTCNQTTGQCPCKDGVTGITCNRCAKGYQQSRSPVAP 444

  Fly   479 CIKQPPRMINMLDTQNTAPEPDEPESSPGSGGDRNGAAGMAAQSQYYRTEGGRECGKCRVSTKRL 543
            |||.|  :|......:|..||.:.:|                   |.:...|         ..::
Zfish   445 CIKIP--VIKPTAVISTTEEPADCDS-------------------YCKPLKG---------NLKI 479

  Fly   544 NLNKFCKRDYAIMAKVIGRDTSSEAVSREVQRRAMDPDVADYEMDQVQPGSARSPITGVYEFQAA 608
            |:.|:||:|||:...|:..:|                 |.|:                       
Zfish   480 NMKKYCKKDYAVQVSVLDMET-----------------VGDW----------------------- 504

  Fly   609 DYPNPNPNPRGSEMERFDLQIQAVFKRSRPGESSGAGNVYGMPNTTLKRGP-MTWIIPTKDLECR 672
                          .:|.:.:.:|:| ||           |.|   ||||. |.| :..|||.|:
Zfish   505 --------------AKFSVSLMSVYK-SR-----------GDP---LKRGDHMLW-VHMKDLACK 539

  Fly   673 CPRIRVNRSYLILG-RDSEAPPGYLGI--GPHSIVIEWKEDWYRRMKRFQRRAR 723
            ||||.:.:.:|||| .:..|.|...|:  ..:|:||:|::.|.||:::|||:.:
Zfish   540 CPRIHMGKRFLILGSTEGTANPERPGLQADKNSLVIQWRDIWTRRLRKFQRKEK 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_001285243.1 LamNT 44..280 CDD:214532 119/244 (49%)
EGF_Lam 312..357 CDD:238012 30/44 (68%)
EGF_Lam 369..426 CDD:238012 39/56 (70%)
EGF_Lam 431..479 CDD:238012 37/47 (79%)
NTR_netrin-1_like 545..723 CDD:239634 48/181 (27%)
ntn2NP_001032492.1 Laminin_N 45..277 CDD:278484 119/260 (46%)
EGF_Lam 278..323 CDD:238012 30/44 (68%)
EGF_Lam 334..384 CDD:238012 35/49 (71%)
EGF_Lam 397..445 CDD:238012 37/47 (79%)
NTR_netrin-1_like 481..597 CDD:239634 48/183 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580914
Domainoid 1 1.000 228 1.000 Domainoid score I2420
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 631 1.000 Inparanoid score I821
OMA 1 1.010 - - QHG48023
OrthoDB 1 1.010 - - D368755at33208
OrthoFinder 1 1.000 - - FOG0003523
OrthoInspector 1 1.000 - - otm24307
orthoMCL 1 0.900 - - OOG6_104609
Panther 1 1.100 - - O PTHR10574
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R17280
SonicParanoid 1 1.000 - - X1381
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.900

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