DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetA and dsd

DIOPT Version :9

Sequence 1:NP_001285243.1 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001263013.1 Gene:dsd / 43315 FlyBaseID:FBgn0039528 Length:1323 Species:Drosophila melanogaster


Alignment Length:650 Identity:119/650 - (18%)
Similarity:196/650 - (30%) Gaps:279/650 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 AHEPRACIPDFVNAAYDAPVVASSTCGSSGAQRYCEYQDHERSCHTCDMTDPLRSFPARSLTDLN 108
            |:||...:...::||..|.::.::...:.|.........|         .|..:|:.|:..:...
  Fly   517 AYEPATRVWSLLSAAPSARLLHTANFVNQGLMMVFGGNTH---------NDTSQSYGAKCYSQDL 572

  Fly   109 NSNNVTC--WRSEPVTGSGDNVTLTLSLGKKFELTYVILQLCPHAPRPDSMVIY-----KSTDHG 166
            ...:|.|  |...|:.|.     |...|. :|..:.|:.:        :|:.||     :..:..
  Fly   573 LVYDVYCDSWHYHPMPGH-----LQADLA-RFGHSSVVFE--------ESLYIYGGFNGQLLNDM 623

  Fly   167 LSWQP--FQFFSSQCRRLFGRPARQSTGRHNEHEARCSDVTRPLVSRIAFSTLEGR--------P 221
            |.:||  ..:::.|.:....||..:..  .:..:.||..:|:  |.|   |.:.||        |
  Fly   624 LRYQPGYCSYYTKQEKCTAARPGVKCI--WDVQKMRCIAITQ--VQR---SAIYGREQYDYVACP 681

  Fly   222 S-SRDLDSSPVLQDWVTATDIRVVFHRLQRPDPQALLSLEAGGATDLASGKYSVPLANG--PAGN 283
            | ||...:|.:|.|          .||.|                :|||.:..|..|.|  ..||
  Fly   682 SKSRLTLTSELLHD----------VHRCQ----------------ELASCQSCVSTAFGCTYCGN 720

  Fly   284 NI-----------------EANLGGDVATSGSGLH------------YAISDF----------SV 309
            .:                 |::....|:|:...|:            |.:|..          |.
  Fly   721 GVCSKERCRETTSMASVFFESSTQMAVSTASPPLNAKHLDSCPISEEYLVSSVCDQLHNCRACSA 785

  Fly   310 GGRC-------KCNGHAS-------------KCSTDASGQLNCECSHNTAGRDC------ERCK- 347
            ...|       :|..:.|             .||...:...||:   |....:|      :||. 
  Fly   786 NLACRWDSEHNRCKSYTSYGGLALNRTQDEVACSPSCASLTNCQ---NCTEDECIWCQNEQRCVD 847

  Fly   348 --------PFHFDRPWARATAKEAN---------------------------------------- 364
                    |:...|.|...|||..:                                        
  Fly   848 RNAYTASFPYGQCREWTTFTAKCRSAPIQSTALAVGSTTALSSAQCGYYNSCQMCLDDPACGWCD 912

  Fly   365 --------------------------------ECKECNCNKHA-----RQCRFNMEIFRLSQGVS 392
                                            .|..||||.|:     :.|.             
  Fly   913 NGSNTGLGRCVVGGALAPYDDTECALKHWFFTSCPRCNCNGHSYCNDQQHCE------------- 964

  Fly   393 GGVCQNCRHSTTGRNCHQCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPC-KDG 456
                |.|.:.|||.:|.:|:.|::.:   |:...| |:.|||:   ..|..|:..:|:|.| ..|
  Fly   965 ----QPCNNLTTGAHCEKCRTGYWGN---PINGGK-CQRCDCN---GQGVYCHPDTGKCFCTTKG 1018

  Fly   457 VTGLTCNRCARGYQQSRSHIAP----CI--------------KQPPRMINMLDTQNTAPEPDEPE 503
            :.|..|.:|.   .|:..|..|    |.              |:..|....::.:|:   |.:||
  Fly  1019 IVGDHCEKCD---SQNHYHGDPLKGSCYYELTIDYQFTFNLSKKEDRHFTQINFRNS---PGKPE 1077

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_001285243.1 LamNT 44..280 CDD:214532 53/255 (21%)
EGF_Lam 312..357 CDD:238012 14/79 (18%)
EGF_Lam 369..426 CDD:238012 15/61 (25%)
EGF_Lam 431..479 CDD:238012 15/52 (29%)
NTR_netrin-1_like 545..723 CDD:239634
dsdNP_001263013.1 CUB 86..212 CDD:238001
PLN02153 290..582 CDD:177814 13/73 (18%)
KELCH repeat 308..349 CDD:276965
Kelch_5 355..391 CDD:290565
KELCH repeat 358..420 CDD:276965
KELCH repeat 424..474 CDD:276965
KELCH repeat 482..531 CDD:276965 3/13 (23%)
KELCH repeat 535..588 CDD:276965 9/61 (15%)
PSI 821..870 CDD:279745 11/51 (22%)
EGF_Lam 948..994 CDD:238012 16/66 (24%)
EGF_Lam 995..1040 CDD:238012 15/50 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445156
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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