DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetA and LAMC1

DIOPT Version :10

Sequence 1:NP_511154.3 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_002284.3 Gene:LAMC1 / 3915 HGNCID:6492 Length:1609 Species:Homo sapiens


Alignment Length:749 Identity:237/749 - (31%)
Similarity:341/749 - (45%) Gaps:151/749 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 DPCYNKAHEPRACIPDFVNAAYDAPVVASSTCGSSGAQRYC---EYQDHERSCHTCDMTDPLRSF 99
            |.|.::...|:.|:|:|||||::..|||::|||:. .:.||   ......:|||.||...|....
Human    38 DECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGTP-PEEYCVQTGVTGVTKSCHLCDAGQPHLQH 101

  Fly   100 PARSLTDLNNSNNVTCWRSEPVTGS---GDNVTLTLSLGKKFELTYVILQLCPHAPRPDSMVIYK 161
            .|..|||.||..:.|.|:|:.:...   ..::.|||.|||.|::|||.|:.  |..||:|..|||
Human   102 GAAFLTDYNNQADTTWWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKF--HTSRPESFAIYK 164

  Fly   162 STDHGLSWQPFQFFSSQCRRLFGRPARQ--STGRHNEHEARC----SDVTRPLVSRIAFSTLEGR 220
            .|.....|.|:|::|..|...:.:..|.  .|| .:|.:|.|    ||::......:||||||||
Human   165 RTREDGPWIPYQYYSGSCENTYSKANRGFIRTG-GDEQQALCTDEFSDISPLTGGNVAFSTLEGR 228

  Fly   221 PSSRDLDSSPVLQDWVTATDIRVVFHRLQR------PDPQALLSLEAGGATDLASGKYSVPLANG 279
            ||:.:.|:|||||:|||||||||..:||..      .||:.|.|                     
Human   229 PSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNDPKVLKS--------------------- 272

  Fly   280 PAGNNIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKCSTDASGQLNCECSHNTAGRDCE 344
                                .:||||||:||||||||||||:|..:...:|.|.|.|||.|.|||
Human   273 --------------------YYYAISDFAVGGRCKCNGHASECMKNEFDKLVCNCKHNTYGVDCE 317

  Fly   345 RCKPFHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCH 409
            :|.||..||||.||||:.|:||..|:||..:::|.|:.|::| |.| .||.|.||:.:|.|.:|.
Human   318 KCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYR-STG-HGGHCTNCQDNTDGAHCE 380

  Fly   410 QCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPCKDGVTGLTCNRCARGYQQ-SR 473
            :|:|.|:|     |.:.:.|.:|.|.|:||....|:| .|:|.||.||.|..|:||..|:.. :.
Human   381 RCRENFFR-----LGNNEACSSCHCSPVGSLSTQCDS-YGRCSCKPGVMGDKCDRCQPGFHSLTE 439

  Fly   474 SHIAPCIKQPPRMIN--------------------------MLDTQNTAPEPDEPESSPGSGGDR 512
            :...||...|...|:                          ..:.:::.|....|....|.....
Human   440 AGCRPCSCDPSGSIDECNIETGRCVCKDNVEGFNCERCKPGFFNLESSNPRGCTPCFCFGHSSVC 504

  Fly   513 NGAAGMAAQS---------QYYRTE--GGRECGKCRVSTKRLNL----NKFCKRDYAIMAKVIGR 562
            ..|.|.:..|         ..:|.|  .|.| .....|::|.::    :.:..|.:...||.:|:
Human   505 TNAVGYSVYSISSTFQIDEDGWRAEQRDGSE-ASLEWSSERQDIAVISDSYFPRYFIAPAKFLGK 568

  Fly   563 DTSSE----AVSREVQRRAMDPDVADYEMDQ----------VQPGSARSPITGVYEF---QAADY 610
            ...|.    :.|..|.||.......|..::.          .|..|..|..|..|.|   :|.||
Human   569 QVLSYGQNLSFSFRVDRRDTRLSAEDLVLEGAGLRVSVPLIAQGNSYPSETTVKYVFRLHEATDY 633

  Fly   611 P-NPNPNPRGSEMERFDLQIQAVFKRSRPGESSGAGNVYGMPNTTLKRG---PMTWIIPTKDLEC 671
            | .|...|  .|.::....:.::..|....|.| ||.:..:...:.:.|   |.||:     ..|
Human   634 PWRPALTP--FEFQKLLNNLTSIKIRGTYSERS-AGYLDDVTLASARPGPGVPATWV-----ESC 690

  Fly   672 RCPRIRVNRSY---LILGRDSEAPPGYLGIGPHS 702
            .|| :.....:   .:.|...|.|    .:||:|
Human   691 TCP-VGYGGQFCEMCLSGYRRETP----NLGPYS 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_511154.3 LamNT 44..280 CDD:214532 94/253 (37%)
EGF_Lam 312..357 CDD:238012 27/44 (61%)
EGF_Lam 369..426 CDD:238012 22/56 (39%)
EGF_Lam 431..479 CDD:238012 18/48 (38%)
NTR_netrin-1_like 545..723 CDD:239634 41/186 (22%)
LAMC1NP_002284.3 Domain VI 34..285 104/291 (36%)
LamNT 44..284 CDD:214532 101/284 (36%)
EGF_Lam 285..330 CDD:238012 27/44 (61%)
Domain V 286..509 82/230 (36%)
Laminin_EGF 342..396 CDD:395007 22/60 (37%)
Laminin_EGF 398..445 CDD:395007 18/47 (38%)
Laminin_EGF 445..492 CDD:395007 4/46 (9%)
Domain IV 510..689 39/187 (21%)
LamB 553..678 CDD:214597 28/127 (22%)
Domain III 690..1030 9/35 (26%)
EGF_Lam 724..771 CDD:238012
EGF_Lam 772..820 CDD:238012
Laminin_EGF 828..875 CDD:395007
EGF_Lam 883..933 CDD:238012
EGF_Lam 935..980 CDD:214543
EGF_Lam 982..1029 CDD:238012
Domain I/II 1031..1609
SCP-1 <1040..1581 CDD:114219
Blue background indicates that the domain is not in the aligned region.

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