DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetA and LAMA4

DIOPT Version :9

Sequence 1:NP_001285243.1 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001098676.2 Gene:LAMA4 / 3910 HGNCID:6484 Length:1823 Species:Homo sapiens


Alignment Length:395 Identity:90/395 - (22%)
Similarity:145/395 - (36%) Gaps:93/395 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 DLDSSPVL--QDWVTATDIRVVFHRLQRPDPQALLSLEA----------------GGATDLASGK 271
            |::.|..:  ||....::.||...||    |.|.....|                |.:.:...|.
Human    35 DIEGSSAVGRQDPPETSEPRVALGRL----PPAAEKCNAGFFHTLSGECVPCDCNGNSNECLDGS 95

  Fly   272 -YSVPLANGPAGNNIEANLGGDVATSGSGLHYAISDFSVGGRCKC-----NGHASKCSTDASGQL 330
             |.|.......|.:.|..|.|.:..|..|.......      |.|     ...|..|.. .:|.:
Human    96 GYCVHCQRNTTGEHCEKCLDGYIGDSIRGAPQFCQP------CPCPLPHLANFAESCYR-KNGAV 153

  Fly   331 NCECSHNTAGRDCERCKPFHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGV 395
            .|.|:.|.||.:||||.|.::..|....:.     ||:|:|:.::..   |: ||.....|: |.
Human   154 RCICNENYAGPNCERCAPGYYGNPLLIGST-----CKKCDCSGNSDP---NL-IFEDCDEVT-GQ 208

  Fly   396 CQNCRHSTTGRNCHQCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPCKDGV--- 457
            |:||..:|||..|.:|..|:|.||    ...|.|..|:|     .|..|:|.:|:| .::|.   
Human   209 CRNCLRNTTGFKCERCAPGYYGDA----RIAKNCAVCNC-----GGGPCDSVTGEC-LEEGFEPP 263

  Fly   458 TGLTCNRCARGYQQSRSHIAPCIKQPPRMINMLDTQNTAPEPDEPESSPGSGGDRNGAAGMAAQS 522
            ||:.|               |.|.....:.::.|....|....|    .|..|..:.::|.||..
Human   264 TGMDC---------------PTISCDKCVWDLTDDLRLAALSIE----EGKSGVLSVSSGAAAHR 309

  Fly   523 QYYRTEGGRECGKCRVSTKRLNLNKFCKRDYAI-------------MAKVIGRDTSSEAVSREVQ 574
            ............|.::|.:.   |::..|...|             :.:::.::..:....:.||
Human   310 HVNEINATIYLLKTKLSERE---NQYALRKIQINNAENTMKSLLSDVEELVEKENQASRKGQLVQ 371

  Fly   575 RRAMD 579
            :.:||
Human   372 KESMD 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_001285243.1 LamNT 44..280 CDD:214532 15/73 (21%)
EGF_Lam 312..357 CDD:238012 16/49 (33%)
EGF_Lam 369..426 CDD:238012 19/56 (34%)
EGF_Lam 431..479 CDD:238012 11/50 (22%)
NTR_netrin-1_like 545..723 CDD:239634 7/48 (15%)
LAMA4NP_001098676.2 EGF_Lam 81..130 CDD:238012 10/48 (21%)
EGF_Lam 131..185 CDD:238012 16/65 (25%)
EGF_Lam 187..238 CDD:238012 20/59 (34%)
Laminin_I 296..554 CDD:283627 13/84 (15%)
SPEC 339..531 CDD:295325 5/38 (13%)
COG1340 426..724 CDD:224259
Prefoldin 510..609 CDD:298833
Laminin_II 734..861 CDD:283628
LamG 835..1012 CDD:238058
LamG 1049..1207 CDD:238058
LamG 1237..1376 CDD:238058
LamG 1492..1624 CDD:238058
LamG 1648..1799 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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