DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetA and LanB1

DIOPT Version :9

Sequence 1:NP_001285243.1 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster


Alignment Length:591 Identity:164/591 - (27%)
Similarity:253/591 - (42%) Gaps:130/591 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILLLLLGTTRFSPIQCISNDVYFKMFSQQAPPED-----PCYN-----KAH--EPRACIPDFVN- 56
            :::|.|.:.::.|:            ..|.||:.     |.|.     |.|  |..:|.|...| 
  Fly     9 VIVLALLSWQWDPV------------DSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNL 61

  Fly    57 -AAYDAPVVASSTCGSSGAQRYC---EYQDHERSCHTCDMTDPLRSFPARS------LTDLNNSN 111
             ...:..:.||||||....:|:|   ..||  :.|..||..:..:..|.::      :.......
  Fly    62 LIGRENRLTASSTCGLHSPERFCILSHLQD--KKCFLCDTREETKHDPYKNHRIGQIIYKTKPGT 124

  Fly   112 NV-TCWRSEPVTGSGDNVTLTLSLGKKFELTYVILQLCPHAPRPDSMVIYKSTDHGLSWQPFQFF 175
            |: |.|:||   ...:|.|:.|.|..:|..|::|:.....  ||.:|.|.:|.|.|.:|..:::|
  Fly   125 NIPTWWQSE---NGKENATIQLDLEAEFHFTHLIITFTTF--RPAAMYIERSFDFGQTWHIYRYF 184

  Fly   176 SSQCRRLF-GRPARQSTGRHNEHEARC----SDVTRPLVSRIAFSTLEGRPSSRDLDSSPVLQDW 235
            :..|:..| |.|    |...|..:..|    |:|.......:.|..|....:..|..:..| |:.
  Fly   185 AYDCKESFPGVP----TVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNINVTDPYAEHV-QNQ 244

  Fly   236 VTATDIRVVFHRLQRPDPQALLSLEAGGATDLASGKYSVPLANGPAGNN-IEANLGGDVATSGSG 299
            :..|::|:...:|.:                              .|:| :::.|..:     ..
  Fly   245 LKMTNLRIQMTKLHK------------------------------LGDNLLDSRLENE-----EK 274

  Fly   300 LHYAISDFSVGGRCKCNGHASKC---------STDASGQLN--CECSHNTAGRDCERCKPFHFDR 353
            .:|.||:..|.|.|.|.||||:|         :.:..|.::  |||:|||.|.:||.|:.|..|.
  Fly   275 YYYGISNMVVRGSCSCYGHASQCLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDL 339

  Fly   354 PWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCHQCKEGFYRD 418
            ||..|..|:.|.||:|.||.||..|.|:..:|..|..||||||.||.|:|.|::|.:|...||||
  Fly   340 PWKPAFGKKTNACKKCECNDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRD 404

  Fly   419 ATKPLTHRKVCKACDCHPIGSSGK-ICNS--------TSGQCPCKDGVTGLTCNRCARGYQQSRS 474
            ..:.:|..:||:.|||.|.|||.. ||:|        .:|.|.||..|||..||:|..||     
  Fly   405 PEQDITSERVCQPCDCDPQGSSDDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGY----- 464

  Fly   475 HIAPCIKQPPRMINMLDTQNTAPEPDEP-ESSPGSGGDRNGAAGMAAQSQYYRTEGGRECGKCRV 538
                           .:.|:..||..|| ..:|....:.:|......:.:..:...|::|.:|..
  Fly   465 ---------------WNLQSDNPEGCEPCTCNPLGTLNNSGCVMRTGECKCKKYVTGKDCNQCMP 514

  Fly   539 STKRLN 544
            .|..|:
  Fly   515 ETYGLS 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_001285243.1 LamNT 44..280 CDD:214532 57/254 (22%)
EGF_Lam 312..357 CDD:238012 22/55 (40%)
EGF_Lam 369..426 CDD:238012 27/56 (48%)
EGF_Lam 431..479 CDD:238012 22/56 (39%)
NTR_netrin-1_like 545..723 CDD:239634 164/591 (28%)
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 59/269 (22%)
EGF_Lam 287..343 CDD:238012 22/55 (40%)
Laminin_EGF 355..415 CDD:278482 27/59 (46%)
Laminin_EGF 418..475 CDD:278482 25/76 (33%)
EGF_Lam 477..526 CDD:238012 8/44 (18%)
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:278482
Laminin_EGF 883..930 CDD:278482
Laminin_EGF 933..988 CDD:278482
Laminin_EGF 991..1043 CDD:278482
Laminin_EGF 1043..1091 CDD:278482
Laminin_EGF 1094..1142 CDD:278482
Laminin_EGF 1142..1190 CDD:278482
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445150
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.