DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetA and Lama3

DIOPT Version :10

Sequence 1:NP_511154.3 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001380677.1 Gene:Lama3 / 307582 RGDID:628776 Length:3333 Species:Rattus norvegicus


Alignment Length:597 Identity:169/597 - (28%)
Similarity:259/597 - (43%) Gaps:129/597 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILLLLLGTTRFSPIQCISNDVYFKMFSQQAPPEDPCYNKAHEPRACI---PDFVNAAYDAPVVAS 66
            :|:|||...|.||  |.|           ...:||       |.|.:   |.:.|.|..|.:.|:
  Rat    15 LLVLLLLLLRMSP--CWS-----------VVAQDP-------PAARLSLHPPYFNLAQAAKIWAT 59

  Fly    67 STCGSSG-------AQRYCE-----------YQDHERSCHTCDMTDPLRSFPARSLTDLNNSNNV 113
            :|||..|       .:.:|:           :....:.|..|:..|..::.||....|    .:.
  Rat    60 ATCGERGLDVSRPRPELFCKLVGGPTAPGSGHTIQGQFCDYCNSEDSRKAHPAIHAID----GSE 120

  Fly   114 TCWRSEPVTGSG---DNVTLTLSLGKKFELTYVILQLCPHAPRPDSMVIYKSTDHGLSWQPFQFF 175
            ..|:|.|:: ||   :.|.|||.||:.|.:.|::::.. ::||||..|:.:|.|.|.::.|:|:|
  Rat   121 RWWQSPPLS-SGTQYNKVNLTLDLGQLFHVAYILIKFA-NSPRPDLWVLERSVDFGNTYSPWQYF 183

  Fly   176 S---SQCRRLFGRPARQSTGRHNEHEARC-SDVTR--PLVS-RIAFSTLEGRPSSRDLDSSPVLQ 233
            :   ..|.:.||:.|..:..|  :.:..| ::.:|  ||.: .|..|.:.|||.::....|..|:
  Rat   184 AHSRGDCLQQFGQEANMAVTR--DDQVLCVTEYSRIVPLENGEIVVSLINGRPGAKHFAFSDTLR 246

  Fly   234 DWVTATDIRVVFHRLQRPDPQALLSLEAGGATDLASGKYSVPLANGPAGNNIEANLGGDVATSGS 298
            ::..||:||:.|.|                 |:...|.........|              |...
  Rat   247 EFTKATNIRLRFLR-----------------TNTLLGHLISKAERDP--------------TVTR 280

  Fly   299 GLHYAISDFSVGGRCKCNGHASKCSTD-ASGQLNCECSHNTAGRDCERCKPFHFDRPWARATAKE 362
            ..:|:|.|.||||||.|||||..||.| ...|..|:|.|:|.|..|.||...:..|||..|...:
  Rat   281 RYYYSIKDISVGGRCVCNGHAEACSADNPEKQFRCKCQHHTCGDTCNRCCAGYNQRPWRPAAQDQ 345

  Fly   363 ANECKECNCNKHARQCRFNMEIFRL-----SQGV--SGGVCQNCRHSTTGRNCHQCKEGFYRDAT 420
            .|||:.|||:.||..|.::..:.|.     |:||  .||||.:|:|:|.|.||.:|.:|::|...
  Rat   346 HNECEACNCHGHAVDCYYDEAVSRQQASLNSKGVYTGGGVCIDCQHNTAGVNCEKCAKGYFRPHG 410

  Fly   421 KPLTHRKVCKACDCHPIGSSGKICNSTSGQCPCKDGVTGLTCNRCARGYQQSRSHIAPCIKQPPR 485
            .|:.....|..|.|.|  .....|:..||:|.||...:|..|..||.||.    :...|::.|  
  Rat   411 VPVEALHGCIPCSCDP--DRADECDQGSGRCHCKPNFSGDFCETCADGYY----NFPFCLRIP-- 467

  Fly   486 MINMLDTQNTAPE----PDEPESSPGSGGDRNGAAGMAAQSQYYR--------TEGGRECGKCRV 538
                     ..|:    |::|.:....|.|.| ..|:..:....|        .||.| |..||.
  Rat   468 ---------VFPDYTLNPEDPMAGNIKGCDCN-LEGVLPEICDDRGRCLCRPGVEGPR-CDSCRS 521

  Fly   539 STKRLNLNKFCK 550
            .:....:.:.|:
  Rat   522 GSYSFPICQACQ 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_511154.3 LamNT 44..280 CDD:214532 66/266 (25%)
EGF_Lam 312..357 CDD:238012 22/45 (49%)
EGF_Lam 369..426 CDD:238012 24/63 (38%)
EGF_Lam 431..479 CDD:238012 15/47 (32%)
NTR_netrin-1_like 545..723 CDD:239634 1/6 (17%)
Lama3NP_001380677.1 LamNT 42..293 CDD:214532 71/289 (25%)
EGF_Lam 294..340 CDD:238012 22/45 (49%)
EGF_Lam 351..419 CDD:238012 24/67 (36%)
EGF_Lam 421..461 CDD:238012 15/45 (33%)
Laminin_EGF 487..534 CDD:395007 11/49 (22%)
EGF_Lam 531..573 CDD:238012 1/3 (33%)
Laminin_EGF 627..677 CDD:395007
EGF_Lam 680..723 CDD:238012
Laminin_EGF 1265..1313 CDD:395007
EGF_Lam 1310..1353 CDD:238012
EGF_Lam 1355..1400 CDD:238012
EGF_Lam 1403..1453 CDD:238012
Laminin_B 1517..1651 CDD:459652
EGF_Lam 1685..1731 CDD:238012
EGF_Lam 1733..1784 CDD:238012
Laminin_I 1846..2103 CDD:310534
Smc <1964..>2283 CDD:440809
Laminin_II 2287..2415 CDD:368703
LamG 2434..2569 CDD:214598
LamG 2601..2741 CDD:238058
LamG 2768..2900 CDD:238058
LamG 2992..3134 CDD:238058
LamG 3158..3309 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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