DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetA and lam-2

DIOPT Version :10

Sequence 1:NP_511154.3 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_509204.3 Gene:lam-2 / 180980 WormBaseID:WBGene00016913 Length:1633 Species:Caenorhabditis elegans


Alignment Length:543 Identity:197/543 - (36%)
Similarity:269/543 - (49%) Gaps:114/543 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 DPCYNKA-HEPRACIPDFVNAAYDAPVVASSTCGSSGAQRYCEYQDH--ERS-CHTCDMTDPLRS 98
            :|||::| .:|:.|:|||||||::..|..::|||:....::|....|  :|| |.|||......|
 Worm    38 NPCYDRATRQPQRCVPDFVNAAFNLEVQVTNTCGTKRPTKFCVQSGHTGQRSVCETCDDRHEGFS 102

  Fly    99 FPARSLTDLNNSNNVTCWRSE--------PVTGSGDNVTLTLSLGKKFELTYVILQLCPHAPRPD 155
            .||:.|||.|..||.|.|:|:        |.|     ..|||.|||.|::|||.|:..  :|||:
 Worm   103 HPAKYLTDFNVGNNETWWQSDTMQEGQQYPTT-----TNLTLVLGKSFDITYVRLKFI--SPRPE 160

  Fly   156 SMVIYKSTDHGLSWQPFQFFSSQCRRLFGRPARQSTGRHNEHEARC----SDVTRPLVSRIAFST 216
            |..|||.|.....|:|:||:|..||..:|...|......||..|:|    ||::......|||||
 Worm   161 SFTIYKKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEATAQCTKEFSDISPITGGNIAFST 225

  Fly   217 LEGRPSSRDLDSSPVLQDWVTATDIRVVFHRLQR------PDPQALLSLEAGGATDLASGKYSVP 275
            ||||||:...:.|.|||.||||:.||:..:|:..      .|||.|.|                 
 Worm   226 LEGRPSAHAFEESEVLQKWVTASAIRISLNRMNTFGDEVFKDPQVLRS----------------- 273

  Fly   276 LANGPAGNNIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKC----STDASGQLNCECSH 336
                                    .:||||||:||||||||||||:|    |.|...:|.|.|.|
 Worm   274 ------------------------YYYAISDFAVGGRCKCNGHASECVGSSSVDGENRLVCRCEH 314

  Fly   337 NTAGRDCERCKPFHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGVCQNCRH 401
            ||.|.||..|.||:.||||...|:.|||||..|||::.:.:|.|:.::|  .:...||.|.:|:.
 Worm   315 NTQGADCNECLPFYNDRPWRSGTSVEANECIACNCSQLSNRCYFDQQLF--EETGHGGHCIDCQG 377

  Fly   402 STTGRNCHQCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPCKDGVTGLTCNRCA 466
            :|.|.:|.||....:|   :|  ....|.||.|:.|||....|:: .|:|.||.||||..|::|.
 Worm   378 NTQGVHCEQCIANHWR---RP--GENYCVACGCNEIGSLSTQCDN-EGKCQCKPGVTGRFCDQCL 436

  Fly   467 RG-YQQSRSHIAPCIKQPPRMINMLDTQNTAPEPDEPESSPGSGGDRNGAAGMAAQSQYYRTEGG 530
            .| |..|.:....|..:....:|           ::|.....||          :.|.....| |
 Worm   437 DGFYDFSTNGCKNCGCETSGSLN-----------NQPRCDSSSG----------SCSCKLNVE-G 479

  Fly   531 RECGKCR-----VSTKRLNLNKF 548
            |:|.||:     :||:    |:|
 Worm   480 RQCDKCKPGYFDLSTE----NQF 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_511154.3 LamNT 44..280 CDD:214532 97/257 (38%)
EGF_Lam 312..357 CDD:238012 28/48 (58%)
EGF_Lam 369..426 CDD:238012 17/56 (30%)
EGF_Lam 431..479 CDD:238012 20/48 (42%)
NTR_netrin-1_like 545..723 CDD:239634 2/4 (50%)
lam-2NP_509204.3 LamNT 45..285 CDD:214532 103/287 (36%)
EGF_Lam 286..337 CDD:238012 28/50 (56%)
Laminin_EGF 347..405 CDD:395007 20/64 (31%)
EGF_Lam 403..447 CDD:214543 19/44 (43%)
LamB 560..684 CDD:214597
EGF_Lam 736..783 CDD:238012
EGF_Lam 785..833 CDD:238012
Laminin_EGF 835..890 CDD:395007
EGF_Lam 889..944 CDD:238012
EGF_Lam 946..991 CDD:214543
EGF_Lam 993..1041 CDD:238012
Smc <1087..>1617 CDD:440809
Blue background indicates that the domain is not in the aligned region.

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