DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetA and Lama2

DIOPT Version :10

Sequence 1:NP_511154.3 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_032507.2 Gene:Lama2 / 16773 MGIID:99912 Length:3118 Species:Mus musculus


Alignment Length:807 Identity:207/807 - (25%)
Similarity:322/807 - (39%) Gaps:201/807 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILLLLLGTTRFSPIQCISNDVYFKMFSQQAPPEDPCYNKAHEPRACIPDFVNAAYDAPVVASSTC 69
            :|||||||...|..|           .:|        ::||:.|...|..:|.|.:|.:..::||
Mouse     9 LLLLLLGTLEGSQTQ-----------RRQ--------SQAHQQRGLFPAVLNLASNALITTNATC 54

  Fly    70 GSSGAQRYCEYQDH-------ERSCHTCDM--TDPLRSFPARSLTDLNNSNNVTCWRSEPVTGSG 125
            |..|.:.||:..:|       ...|..|:.  ::|.:..|..:..|..|    |.|:|..:....
Mouse    55 GEKGPEMYCKLVEHVPGQPVRNPQCRICNQNSSNPYQRHPITNAIDGKN----TWWQSPSIKNGV 115

  Fly   126 D--NVTLTLSLGKKFELTYVILQLCPHAPRPDSMVIYKSTDHGLSWQPFQFFS---SQCRRLFG- 184
            :  .||:||.|.:.|::.|||:: ..::|||.:.::.:|.| .:.::|:|:.:   ::|..|:. 
Mouse   116 EYHYVTITLDLQQVFQIAYVIVK-AANSPRPGNWILERSLD-DVEYKPWQYHAVTDTECLTLYNI 178

  Fly   185 RPARQSTGRHNEHEARCSDV---TRPLVS-RIAFSTLEGRPSSRDLDSSPVLQDWVTATDIRVVF 245
            .|.........:.|..|:..   ..||.: .|..|.:.||||:.  |.||.|.::.:|..||:.|
Mouse   179 YPRTGPPSYAKDDEVICTSFYSKIHPLENGEIHISLINGRPSAD--DPSPELLEFTSARYIRLRF 241

  Fly   246 HRLQRPDPQALLSLEAGGATDLASGKYSVPLANGPAGNNIEANLGGDVATSGSGLHYAISDFSVG 310
            .|::        :|.|    ||....:..|....|            :.|  ...:|::.|.|||
Mouse   242 QRIR--------TLNA----DLMMFAHKDPREIDP------------IVT--RRYYYSVKDISVG 280

  Fly   311 GRCKCNGHASKCSTD-ASGQLNCECSHNTAGRDCERCKPFHFDRPWARATAKEANECKECNCNKH 374
            |.|.|.|||..|..| |:.:..|||.|||.|..|:||.|....:||...|....:||:.|||:..
Mouse   281 GMCICYGHARACPLDPATNKSRCECEHNTCGESCDRCCPGFHQKPWRAGTFLTKSECEACNCHGK 345

  Fly   375 ARQCRF-------NMEIFRLSQGVSGGVCQNCRHSTTGRNCHQCKEGFYRDATKPLTHRKVCKAC 432
            |.:|.:       |:.:....:.:.||||.||.|:|.|.||..|.:||:|.......:.:.|:.|
Mouse   346 AEECYYDETVASRNLSLNIHGKYIGGGVCINCTHNTAGINCETCVDGFFRPKGVSPNYPRPCQPC 410

  Fly   433 DCHPIGSSGKIC---------NSTSGQCPCKDGVTGLTCNRCARGYQQSRSHIAP-CIKQPPRMI 487
            .|.|.||..::|         ....|.|.||.|..|:.|:||.|||     |..| |  ||....
Mouse   411 HCDPTGSLSEVCVKDEKYAQRGLKPGSCHCKTGFGGVNCDRCVRGY-----HGYPDC--QPCNCS 468

  Fly   488 NMLDTQNTAPEPDEPESSPGS------GGD----RNGAAGMAAQSQYYRTEGGRECGKCRVSTKR 542
            .:..|.      ::|...|.|      |.|    ::|...:...:|    :|..||....||.: 
Mouse   469 GLGSTN------EDPCVGPCSCKENVEGEDCSRCKSGFFNLQEDNQ----KGCEECFCSGVSNR- 522

  Fly   543 LNLNKFCKRDYAIMAKVIGRDTSSEAVSREVQRRAMDPDVADYEMDQ---VQPGSARSPITGVYE 604
                  |:..|.....:  :|.....::....|..|.|.:.:.:..|   :....||..:...|.
Mouse   523 ------CQSSYWTYGNI--QDMRGWYLTDLSGRIRMAPQLDNPDSPQQISISNSEARKSLLDGYY 579

  Fly   605 FQAADYPNPN-----PNPRGS---------EMERFD----LQIQAVFKRSRPGESSGAGNVYGMP 651
            :.|   |.|.     |...|.         |.|..|    ||:..:|:.:....|:....||..|
Mouse   580 WSA---PPPYLGNRLPAVGGQLSFTISYDLEEEEDDTEKILQLMIIFEGNDLRISTAYKEVYLEP 641

  Fly   652 N------TTLKRGPMT------------WIIPTKDLECRCPRIRVNRSYLILGRDS--------- 689
            :      .:||....|            ::|...:||....:|..|     ||.|:         
Mouse   642 SEEHIEEVSLKEEAFTIHGTNLPVTRKDFMIVLTNLERVLMQITYN-----LGMDAIFRLSSVNL 701

  Fly   690 -------------------EAPPGYLG 697
                               :.||||.|
Mouse   702 ESAVPYPTDRRIATDVEVCQCPPGYSG 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_511154.3 LamNT 44..280 CDD:214532 66/254 (26%)
EGF_Lam 312..357 CDD:238012 21/45 (47%)
EGF_Lam 369..426 CDD:238012 21/63 (33%)
EGF_Lam 431..479 CDD:238012 20/57 (35%)
NTR_netrin-1_like 545..723 CDD:239634 41/220 (19%)
Lama2NP_032507.2 LamNT 29..281 CDD:214532 72/285 (25%)
EGF_Lam 283..330 CDD:238012 21/46 (46%)
Laminin_EGF 410..467 CDD:395007 23/63 (37%)
Laminin_EGF 465..511 CDD:395007 8/55 (15%)
Laminin_B 579..718 CDD:459652 26/146 (18%)
EGF_Lam 752..801 CDD:238012
EGF_Lam 802..859 CDD:238012
EGF_Lam 860..912 CDD:238012
EGF_Lam 913..960 CDD:238012
EGF_Lam 963..1007 CDD:214543
EGF_Lam 1009..1054 CDD:238012
Laminin_EGF 1056..1104 CDD:395007
Laminin_EGF 1102..1159 CDD:395007
LamB 1225..1360 CDD:214597
EGF_Lam <1375..1403 CDD:238012
Laminin_EGF 1416..1462 CDD:395007
Laminin_EGF 1465..1520 CDD:395007
EGF_Lam 1523..1566 CDD:214543
Domain II and I 1570..2140
Laminin_I 1589..1848 CDD:310534
COG4372 1694..2054 CDD:443500
Laminin_II 2033..2168 CDD:368703
Laminin_G_1 2170..2310 CDD:395008
Laminin_G_1 2364..2503 CDD:395008
LamG 2524..2686 CDD:238058
Laminin_G_1 2789..2917 CDD:395008
LamG 2937..3089 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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