DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetA and lamc1

DIOPT Version :10

Sequence 1:NP_511154.3 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001090659.1 Gene:lamc1 / 100036631 XenbaseID:XB-GENE-478553 Length:1592 Species:Xenopus tropicalis


Alignment Length:783 Identity:246/783 - (31%)
Similarity:342/783 - (43%) Gaps:201/783 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILLLLLGTTRFSPIQCISNDVYFKMFSQQAPPEDPCYNKAHEPRACIPDFVNAAYDAPVVASSTC 69
            :.:|||||.|.:                    .|.||.:. .|:.|:|:|||||::|.|||::||
 Frog     9 LAVLLLGTVRAA--------------------MDECYEEG-SPQRCMPEFVNAAFNATVVATNTC 52

  Fly    70 GSSGAQRYC---EYQDHERSCHTCDMTDPLRSFPARSLTDLNNSNNVTCWRSEPVTGS---GDNV 128
            |:. .:.||   ......:|||.||.........|..|||.||...:|.|:|:.:...   ...:
 Frog    53 GTP-PEEYCVQTGVTGVTKSCHICDSGQFHLQHGAEYLTDYNNQAEITWWQSQTMLAGIQYPSTI 116

  Fly   129 TLTLSLGKKFELTYVILQLCPHAPRPDSMVIYKSTDHGLSWQPFQFFSSQCRRLFGRPARQ--ST 191
            .|||.|||.|::|||.|:.  |..||:|..:||.|.....|.|:|::|..|.:.:.:..|.  .|
 Frog   117 NLTLHLGKAFDITYVRLKF--HTSRPESFALYKRTHEDGPWIPYQYYSGSCEKTYQKFNRGFIRT 179

  Fly   192 GRHNEHEARC----SDVTRPLVSRIAFSTLEGRPSSRDLDSSPVLQDWVTATDIRVVFHRLQR-- 250
            | .:|.:|.|    ||::......:||||||||||:.:.|:|||||:|||||||||..:||..  
 Frog   180 G-EDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFG 243

  Fly   251 ----PDPQALLSLEAGGATDLASGKYSVPLANGPAGNNIEANLGGDVATSGSGLHYAISDFSVGG 311
                .||:.|.|                                         .:||||||:|||
 Frog   244 DEVFSDPKVLKS-----------------------------------------YYYAISDFAVGG 267

  Fly   312 RCKCNGHASKCSTDASGQLNCECSHNTAGRDCERCKPFHFDRPWARATAKEANECKECNCNKHAR 376
            |||||||||:|..:...::.|.|.|||.|.|||:|.||:.||||.|:||...|||..||||..::
 Frog   268 RCKCNGHASECVRNEFEKIVCNCKHNTFGSDCEKCLPFYNDRPWRRSTADSPNECLPCNCNGRSQ 332

  Fly   377 QCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCHQCKEGFYR-DATKPLTHRKVCKACDCHPIGSS 440
            :|.|:.|::| |.| .||.|..|..:|.|.||.:|:|.:|| |..:|      |.||.|:|:||.
 Frog   333 ECYFDPELYR-STG-HGGHCTGCADNTDGPNCERCRENYYRQDNNEP------CHACQCNPVGSL 389

  Fly   441 GKICNSTSGQCPCKDGVTGLTCNRCARGYQQ-SRSHIAPCIKQPPRMINMLDTQNTAPEPDEPES 504
            ...|:: .|:|.||.||.|..|:||..|:.. :.:...||...|            |...||...
 Frog   390 STQCDN-YGRCSCKPGVMGEKCDRCQPGFHSLTEAGCRPCACNP------------AGSTDECNV 441

  Fly   505 SPGSGGDRNGAAGMAAQSQYYRTEGG---------RECGKCRVSTKRLNLNKFCKRDYAIMAKVI 560
            ..|....::...|...:    |.:.|         |.|..|           ||....::.:...
 Frog   442 ETGRCSCKDNVEGFNCE----RCKPGFFHLDEANPRGCTPC-----------FCYGHSSVCSSAE 491

  Fly   561 GRDTSSEAVSRE-------VQRRAMDPDVADYEMDQVQPGSARSPITGVY---------EF---Q 606
            |...||...:.|       .|:|    |.::|.:..|...||.|.|:..|         :|   |
 Frog   492 GYRVSSIVSTFESGVEGWTAQQR----DGSEYSLSWVSDSSAVSVISESYFPIYFIAPAKFLGNQ 552

  Fly   607 AADYPNPNPNPRGS-EMERFDLQIQAVFKRSRPGESSG---------AGNVYGMPNTTLKR---- 657
            .|.|   ..|...| .:||.|.::.|   .....|.:|         .||.|  |:.|.:|    
 Frog   553 GASY---GQNLTFSFRVERRDTRLSA---EDLVLEGAGLRVSVPLIAQGNSY--PSETTQRYIFR 609

  Fly   658 ----GPMTWIIPTKDLECR-----CPRIRVNRSYLILGRDSEAPPGYL----------GIGPHSI 703
                ....|.......|.:     ...|::..||      ||...|:|          |.||.:.
 Frog   610 MHEATDYPWRPSVSPFEFQKMLQNLTAIKIRGSY------SERSAGFLEEVSLVTAVAGAGPSAP 668

  Fly   704 VIE 706
            .:|
 Frog   669 WVE 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetANP_511154.3 LamNT 44..280 CDD:214532 93/253 (37%)
EGF_Lam 312..357 CDD:238012 26/44 (59%)
EGF_Lam 369..426 CDD:238012 24/57 (42%)
EGF_Lam 431..479 CDD:238012 18/48 (38%)
NTR_netrin-1_like 545..723 CDD:239634 47/214 (22%)
lamc1NP_001090659.1 LamNT 27..267 CDD:214532 100/285 (35%)
EGF_Lam 268..313 CDD:238012 26/44 (59%)
Laminin_EGF 325..378 CDD:395007 24/60 (40%)
Laminin_EGF 381..428 CDD:395007 17/47 (36%)
Laminin_EGF 428..475 CDD:395007 10/62 (16%)
Laminin_B 541..671 CDD:459652 30/143 (21%)
Laminin_EGF 707..753 CDD:395007
EGF_Lam 755..803 CDD:238012
Laminin_EGF 811..855 CDD:395007
EGF_Lam 866..916 CDD:238012
EGF_Lam 918..963 CDD:214543
EGF_Lam 965..1012 CDD:238012
Domain II and I. /evidence=ECO:0000250 1013..1592
Smc <1018..>1544 CDD:440809
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1456..1489
Blue background indicates that the domain is not in the aligned region.

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