DRSC/TRiP Functional Genomics Resources

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Protein Alignment gtf2a1 and stnB

DIOPT Version :9

Sequence 1:NP_997822.1 Gene:gtf2a1 / 323974 ZFINID:ZDB-GENE-030131-2694 Length:369 Species:Danio rerio
Sequence 2:NP_001036318.2 Gene:stnB / 4379834 FlyBaseID:FBgn0016975 Length:1262 Species:Drosophila melanogaster


Alignment Length:281 Identity:61/281 - (21%)
Similarity:91/281 - (32%) Gaps:81/281 - (28%)


- Green bases have known domain annotations that are detailed below.


Zfish   166 LLQQQVLPQMQPGGVQAPVIQQVL--TPLQGGLPQQ-------------------TGVIIQPQQI 209
            |.:|..:|..||.. :..::...|  |..:|..|:|                   |.::|:|.:.
  Fly   304 LFEQPHVPLSQPAS-KPDLLHDDLDETIGEGEPPEQEEPDTEQSNEISSRDEPVFTSLLIRPDES 367

Zfish   210 VLTGNKVPQNTQVM--QAAAMAVQSGPGDAQVQTQPQAQ--------QQQQQQQQQASQQPPMML 264
            .......||....:  |...||..||....|..|.|..:        :...:.:.:|.|:|....
  Fly   368 THDITSQPQAATGLERQVNNMAAPSGTASTQRATTPDIEITTVEDLPRSDDEDEPEAMQEPETET 432

Zfish   265 QVDGAGDTSSEEDEEE--------------EDEYDEDEDEDKEKDGGED------GQVEEEPLNS 309
            :.....||..|...|.              :.|....|.|.:|.|.|.|      ||:...|..|
  Fly   433 KPQIEPDTEPEIVSEHSPPTERLVTQAALVDGELIAAEPEPEEMDTGLDFPLASSGQLSANPFAS 497

Zfish   310 GDD-----------------VSDEEDQ-----ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 352
            .|:                 |:|.:.|     ....|.|:.....|:......|:....||.|..
  Fly   498 PDEEEPNFAPMPAAVANIFAVNDPDSQMETPKAPSHTANIFASDPDEFDAFSAKFDSVKKDNISI 562

Zfish   353 LNGRDFVFSKAI----GDAEW 369
            ::|  |..|.||    ||| |
  Fly   563 MDG--FGGSGAITPTGGDA-W 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gtf2a1NP_997822.1 TFIIA_alpha_beta_like 10..>60 CDD:199899
TFIIA 13..369 CDD:281188 60/279 (22%)
TFIIA_alpha_beta_like <312..369 CDD:199899 18/82 (22%)
stnBNP_001036318.2 Trypan_PARP 377..496 CDD:114603 25/118 (21%)
AP_MHD_Cterm 897..1219 CDD:299401
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1533
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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