DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sbm and SAM3

DIOPT Version :9

Sequence 1:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_015049.1 Gene:SAM3 / 855854 SGDID:S000006195 Length:587 Species:Saccharomyces cerevisiae


Alignment Length:536 Identity:104/536 - (19%)
Similarity:191/536 - (35%) Gaps:147/536 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 TEGPEAP-ETDSSGT--GRMR------------KPLERNGSTQNHVVH------------LERRL 84
            ||....| ::|.||:  .||:            :.||.:..|:...:.            .:|.|
Yeast    18 TESTTIPNDSDRSGSLIRRMKDSFKQSNLHVIPEDLENSEQTEQEKIQWKLASQPYQKVLSQRHL 82

  Fly    85 GLFSGVALIVGTMIGSGIFV--------SPSGLLVRTGSVGVSFIIWLACGVLSLLGALAYAELG 141
            .:     :.:|..:|:|:|:        .|:.||:....||.|    :.|.|.|.      |||.
Yeast    83 TM-----IAIGGTLGTGLFIGLGYSLASGPAALLIGFLLVGTS----MFCVVQSA------AELS 132

  Fly   142 TMNTSSGAEWAY---FMD---AYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVEAFVTECDP 200
            .....||:...:   |:|   .:..|..:..:|   |:..||::....|:.:.:           
Yeast   133 CQFPVSGSYATHVSRFIDESVGFTVATNYALAW---LISFPSELIGCALTISYW----------- 183

  Fly   201 PRGVVKMVALVAI--VMILFVNCYSVNLGMAVQNVFTAAKLVAV-------VVVICGGA------ 250
             ...|.....|||  |.|:.:|.:.|......:...:..|::|:       :|:|.||.      
Yeast   184 -NQTVNPAVWVAIFYVFIMVLNLFGVRGFAETEFALSIIKVIAIFIFIIIGIVLIAGGGPNSTGY 247

  Fly   251 -----WKLMQGNTQHLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRS- 309
                 |        |...||..|:  ...:...|.:..:::.|...:...:.|.||.|. :.|: 
Yeast   248 IGAKYW--------HDPGAFAKPV--FKNLCNTFVSAAFSFGGSELVLLTSTESKNISA-ISRAA 301

  Fly   310 ---------------IIIGIPLVTLCYALINISYLAAMSPQEMIESEAVAVTFGNR-ILGA-LAW 357
                           :|||      |....|...|.:.|..|.:.:....:...|. .:|| ::.
Yeast   302 KGTFWRIAIFYITTVVIIG------CLVPYNDPRLLSGSNSEDVSASPFVIALSNTGSMGAKVSN 360

  Fly   358 LMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGL-------IFHSLI 415
            .|.:.:.::.....|..::|:.||..|....|.|..:.||:. |:..|..|:       :...|:
Yeast   361 FMNVVILVAVVSVCNSCVYASSRLIQALGASGQLPSVCSYMD-RKGRPLVGIGISGAFGLLGFLV 424

  Fly   416 ASAM--VLHGTIDSLIDFFSFTAW--IFYGGAMLALIVMRYTKPNYPRPYK---------VPIII 467
            ||..  .:...:.:|....||..|  |........:.:....:.|....||         :..::
Yeast   425 ASKKEDEVFTWLFALCSISSFFTWFCICMSQIRFRMALKAQGRSNDEIAYKSILGVYGGILGCVL 489

  Fly   468 PVVVLVISVYLVAAPI 483
            ..:::...:|:.|||:
Yeast   490 NALLIAGEIYVSAAPV 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbmNP_727785.1 2A0308 53..532 CDD:273332 102/530 (19%)
SAM3NP_015049.1 2A0310 74..551 CDD:273334 93/480 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345683
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53617
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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