DRSC/TRiP Functional Genomics Resources

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Protein Alignment sbm and psmd5

DIOPT Version :9

Sequence 1:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001015983.1 Gene:psmd5 / 548737 XenbaseID:XB-GENE-491782 Length:505 Species:Xenopus tropicalis


Alignment Length:375 Identity:69/375 - (18%)
Similarity:108/375 - (28%) Gaps:138/375 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 STLVLKPSQMAIICLSFAQYAVEAFVTECDP-----------------PRGVVKMVALVAIVMIL 217
            |.|.:...:...:|:    ..:|.|:...:|                 |...||::|:..:..| 
 Frog    52 SLLNVNDREQIALCV----VILERFLQALEPVDIARNYKEELQRGLYHPDDSVKILAITQVGRI- 111

  Fly   218 FVNCYSVNLGMAVQNVFTAAKLVAVVVVICGG------------AWKLMQGNTQHLSNAFNG--- 267
             |.|     ..|:..:|...:|:..:::..||            ..|:.| .|..|...|:.   
 Frog   112 -VEC-----SAALAEIFNNLELLKQIILSIGGDKLSVAKEAIKSISKIAQ-TTSGLDVLFSSNLL 169

  Fly   268 -PMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVTLCYALINISYLAA 331
             .:.||.||:......::        ..|.|.....:::|...:..|: :..|...|.....|..
 Frog   170 TELKNVMAISDIVRYRVY--------ELVVEISSVSAESLGYCVTSGL-VPQLLEELTGDDVLIR 225

  Fly   332 MSPQEMIESEAVAV-------------TFGNRILGA-----LAWLMP------------------ 360
            ::..||:.|.|..:             ...|.||||     ..:.:|                  
 Frog   226 VTCTEMVTSLATTLHGRQYLAQQGIIDKISNMILGADSDPFSGFYLPGLVKFFGNLAVVDSPQQI 290

  Fly   361 ----------------------LSVTISTFGSANGTLFAAGRLCFAAS-------REGH------ 390
                                  |.|.:.|.|.....|.....|....|       |.||      
 Frog   291 CEHYPAFLQKVFDMAEGQDVTMLGVAVDTLGILGSNLEGKQVLQKTGSKFQTILKRIGHHAKNSS 355

  Fly   391 ------LLDILSYV-------HVRRLTPAPGLIFHSLIASAMVLHGTIDS 427
                  .||.||.:       |...|.......||||.|..|.|..:|.|
 Frog   356 TEMRVRCLDALSSLFYLPEDCHTEDLLAMARTWFHSLSAQPMDLFRSIAS 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbmNP_727785.1 2A0308 53..532 CDD:273332 69/375 (18%)
psmd5NP_001015983.1 Proteasom_PSMB 1..505 CDD:371102 69/375 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1287
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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