DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sbm and Slc7a4

DIOPT Version :9

Sequence 1:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001100548.1 Gene:Slc7a4 / 303787 RGDID:1305905 Length:635 Species:Rattus norvegicus


Alignment Length:561 Identity:125/561 - (22%)
Similarity:223/561 - (39%) Gaps:113/561 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 KPLERNGSTQNHVVHLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVL 129
            ||||.: ||:   ..|.|.|.......|.||.|:|||::|. :|.:.:..:.....:.:|...|.
  Rat    22 KPLEES-STE---TSLRRCLSTLDLTLLGVGGMVGSGLYVL-TGTVAKDMAGPAVLLSFLVAAVA 81

  Fly   130 SLLGALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVEAF 194
            |||.||.|||.|.....:|:.:.:...:.|...|||..| :.|:......|.:..:::.|....|
  Rat    82 SLLAALCYAEFGARVPRTGSAYLFTYVSMGEIWAFLIGW-NVLLEYLIGGAAVARAWSGYLDAIF 145

  Fly   195 ------VTECDPPRGVVKM----------VALVAIVMILFVNCYSVNLGMAVQNVFTAAKLVAVV 243
                  .||..  .||.:|          .|.:.:|...||:| ...:...:.:.|:|..|:.::
  Rat   146 NHSIRNFTESH--MGVWQMPFLAHYPDFLAAGILLVASAFVSC-GARVSSWLNHTFSAISLIVIL 207

  Fly   244 VVICGG-------AWKLMQGNTQHLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKN 301
            .:|..|       .|...:|.....  .|:|.:   ...||.||    |:.|::.:...:||.||
  Rat   208 FIIVLGFILARPHNWSAEEGGFAPF--GFSGIL---AGTATCFY----AFVGFDVIAASSEEAKN 263

  Fly   302 PSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESE-AVAVTFGNRILGALAWLMPLSVTI 365
            |...:|.:|.|.:.|....|.|:: :.|..|.|...::.: |:|..|..|..|...::    |.:
  Rat   264 PRWAVPMAIAISLGLAAGAYILVS-TVLTLMVPWHSLDPDSALADAFYRRGYGWAGFI----VAV 323

  Fly   366 STFGSAN----GTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTID 426
            .:..:.|    ..||:..|:.:|.:.:|....:.:.||.|...|..|::...::.:.:.|...::
  Rat   324 GSICAMNTVLLSNLFSLPRIVYAMAADGLFFQVFARVHPRTQVPVVGILVFGVLMALLALLMDLE 388

  Fly   427 SLIDFFSFTAWIFYGGAMLALIVMRYTK---PNYPRP---------------------------- 460
            :|:.|.|....:.|.....::||:|:.|   |:.|.|                            
  Rat   389 ALVQFLSIGTLLAYTFVATSIIVLRFQKASPPSSPCPASPGPTVKKYDSFSDHIQLVDAVQASMS 453

  Fly   461 --------------------------YKVPIIIPVVVLVISVYLVAAPIFETPRVEYLYALLFIF 499
                                      :.:.|:|...:.:..|.:........||  :.|.||.:.
  Rat   454 EPGQLRPALKPFLGFLDGLSPGTAVTWALGILIASAISLACVLVFGNSALHLPR--WGYVLLLVV 516

  Fly   500 AGLIFYVPFVKLGMTPRFMNKVTLFFQL-LLEVVPTSSMAM 539
            :|.:|....:.||...:...:.|  ||: |:.:.|..|:.:
  Rat   517 SGAVFLSSLLVLGAHQQQKKQDT--FQIPLVPLTPALSILL 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbmNP_727785.1 2A0308 53..532 CDD:273332 123/552 (22%)
Slc7a4NP_001100548.1 2A0303 14..592 CDD:273330 125/561 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53617
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.