DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sbm and F23F1.6

DIOPT Version :9

Sequence 1:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_493642.1 Gene:F23F1.6 / 184903 WormBaseID:WBGene00017747 Length:583 Species:Caenorhabditis elegans


Alignment Length:558 Identity:126/558 - (22%)
Similarity:219/558 - (39%) Gaps:110/558 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 RKPLERNGSTQNHVVHLE----RRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWL 124
            ||.....||      |||    |.|.:...:.:.:|.|||:||:|. :|.:||..:.....:.::
 Worm    12 RKKTFDGGS------HLESQMKRCLTILDVMFIAIGHMIGAGIYVL-TGSVVRNQAGPAIILSFI 69

  Fly   125 ACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAI-------- 181
            ..|..:||.|.:|||.|.....:|:.:.|.....|...||:..|...|.......|:        
 Worm    70 FSGFAALLSAFSYAEFGARFPRAGSAYTYSYVGMGEIWAFIVGWTVPLEYMIGNAAVARSWSAYF 134

  Fly   182 ---ICLSFAQYAVEAFVTECDPPRGVVKMVALVAIVMILFVNCYSVNLGMA----VQNVFTAAKL 239
               :..|.:.:.::. |......:|...:........:||:...:|.:|..    |...|....|
 Worm   135 DNLVSKSVSNWTLDT-VGRLSDGKGFFALYPDFLAFFLLFLVAVAVAMGSKFSANVNTSFVFLNL 198

  Fly   240 -VAVVVVICG---GAWKLMQGNTQHLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIK 300
             |...|:|||   ..:.|..|..|...:.| .|....|||:.| .|..:|:.|:..|....||.|
 Worm   199 AVLAFVIICGLTYADFSLWSGTYQDGRSKF-FPYGIQGAISGA-STCFFAFIGFEALATAGEEAK 261

  Fly   301 NPSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESEAV-AVTF---GNRI------LGAL 355
            ||.:.:|.:....:.::::.|.|:..| |..|.|.::::.:|. |..|   |..:      :|||
 Worm   262 NPHRTIPLATFTSLAIISVIYVLMGAS-LTLMIPYDLVDPDAAFAAAFEMKGATVAKIIMSVGAL 325

  Fly   356 AWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMV 420
            |.::...||    ||     ||..|..:|.:.:|.:......::.:..||....|..::|.:.:.
 Worm   326 AGMLNNLVT----GS-----FALPRAVYAMADDGLIFGWFGVINSKTKTPLNATIVFTIINAILA 381

  Fly   421 LHGTIDSLIDFFSFTAWIFYGGAMLALIVMRY-------TKPNYPR--------PYK-------- 462
            |...:.:|:||.|....:.|....:.:|::|:       :..:|..        |::        
 Worm   382 LVFDLQALVDFLSIGTLLAYSMVSICVIILRHQSHLVDGSATDYDNGGCLKSWVPFQGVWENFSE 446

  Fly   463 -VPIIIPVVVLVISVYLVAAPIFETPRVEYLYALLFIFAGLIF---------------------- 504
             :.|.:.|..|:.....:|.| |.|........::.:..|..|                      
 Worm   447 GISIRVAVAGLIFGYICLAIP-FRTGIFSNAGGIILLTVGAAFSLLSFVFILGHEQNKSTSTYKV 510

  Fly   505 -YVPFVK-LGMTPR-----FMNKVT---LFFQLLLEVV 532
             .|||:. ||:...     ::|.:|   ||..|.:.:|
 Worm   511 PLVPFIPCLGLLINVFMMVYLNSMTWIRLFVWLAIGIV 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbmNP_727785.1 2A0308 53..532 CDD:273332 125/556 (22%)
F23F1.6NP_493642.1 2A0303 1..560 CDD:273330 126/558 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165410
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53617
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2200
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.880

Return to query results.
Submit another query.