DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sbm and aat-3

DIOPT Version :9

Sequence 1:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001300351.1 Gene:aat-3 / 180557 WormBaseID:WBGene00000004 Length:529 Species:Caenorhabditis elegans


Alignment Length:540 Identity:192/540 - (35%)
Similarity:302/540 - (55%) Gaps:34/540 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SQLFCLQKNACKNNSTDNNRGHNVPTKTTSNGTMCANGSLGTEGPEAPETDSSGTGRMRKPLERN 70
            |..|.|    |.:|      |.:..|.|...|   .:|.. |..|:..:.:.|      :||.:.
 Worm     5 SSSFAL----CPSN------GRHTHTHTHKQG---LDGHT-TIRPKMGKQEQS------EPLNQE 49

  Fly    71 GSTQNHVVH-----LERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVLS 130
            .|.::|...     ||:.:.||:||::|||.:||||||:||:|:..:.||||:|.|:|:..|:.:
 Worm    50 PSNEHHDEEVGDKGLEKTMTLFNGVSIIVGCIIGSGIFISPTGIQAQAGSVGLSLIVWVLSGLFA 114

  Fly   131 LLGALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVEAFV 195
            .:||..||||||:...||.::||.|:|:||..|||..|:.::|::|....|:.|:||.|.::.|.
 Worm   115 GIGAFCYAELGTLIRKSGGDYAYIMEAFGPFLAFLRLWIESIVVRPCTATIVALTFAIYMLKPFY 179

  Fly   196 TECDPPRGVVKMVALVAIVMILFVNCYSVNLGMAVQNVFTAAKLVAVVVVICGGAWKLMQGNTQ- 259
            .:||.|....:::|.:.:|::..|||.||.....||:.|...|..|:|::|..|.|.::.|..: 
 Worm   180 PDCDSPPLSTELIAALLLVLLTAVNCISVKWASKVQDFFFVTKTAALVLIIFTGLWNMVSGKPEA 244

  Fly   260 --HLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVTLCYA 322
              ...|.|.....::...:.|||:||:||.|||.||::.||::||.:|||.||.|...|.|:.|.
 Worm   245 FDSFENIFENTAKDLETASLAFYSGLFAYQGWNYLNFIVEELQNPKRNLPLSIAISCSLCTIIYT 309

  Fly   323 LINISYLAAMSPQEMIESEAVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASR 387
            |.|::...:::|.||:.|.||||.|..:..|..|:.||:.|..||.|||||.:..:.||.:..:|
 Worm   310 LTNVALYTSITPDEMLASPAVAVLFAEKNYGWFAFCMPIFVACSTIGSANGVILTSSRLFYCGAR 374

  Fly   388 EGHLLDILSYVHVRRLTPAPGLIFHSLIASA-MVLHGTIDSLIDFFSFTAWIFYGGAMLALIVMR 451
            ||.:.::|:.|:....||.|.:|...|::.. ::|...|.|||::...:.||..|||:|||...|
 Worm   375 EGQMPNVLTMVNKTTKTPIPAVILTGLLSLLYLLLSNNIYSLINYIQVSYWIAIGGAILALFYFR 439

  Fly   452 YTKPNYPRPYKVPIIIPVVVLVISVYLVAAPIFETPRVEYLYALLFIFAGLIFYVPFVKLGMTPR 516
            .|.|:.||..|.||:.|::..:..|.||..|:...|: :....:|.:.:|:..|:.|:.....|:
 Worm   440 KTMPDAPRAVKAPIVFPIIFFIGCVLLVLVPVLGNPK-DTAIGILIMLSGVPVYLIFIAWKGKPK 503

  Fly   517 ----FMNKVTLFFQLLLEVV 532
                ..:.||:|.|.|..||
 Worm   504 CIDSLTDSVTIFTQKLFMVV 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbmNP_727785.1 2A0308 53..532 CDD:273332 178/491 (36%)
aat-3NP_001300351.1 2A0308 40..527 CDD:273332 180/491 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1287
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53617
OrthoDB 1 1.010 - - D621852at2759
OrthoFinder 1 1.000 - - FOG0000064
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100314
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X75
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.730

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