DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sbm and B0454.6

DIOPT Version :9

Sequence 1:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_494428.1 Gene:B0454.6 / 173650 WormBaseID:WBGene00015197 Length:585 Species:Caenorhabditis elegans


Alignment Length:501 Identity:114/501 - (22%)
Similarity:199/501 - (39%) Gaps:82/501 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 HLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLA-CGVLSLLGALAYAELGT 142
            :|.|.|||.....|.:|.|:|:||:|. :|.:|| ...|.|.|...| .|:.:||.|.:|||.|.
 Worm    24 NLRRCLGLMDITFLALGQMMGAGIYVL-TGTVVR-NQAGPSIIFSFALAGIAALLSAFSYAEFGA 86

  Fly   143 MNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQY---AVEAFVT-------- 196
            ....:|:.:.|....:|...||:..|...|...... |.:..|::.|   .::.::.        
 Worm    87 RFPRAGSAYTYTYIGFGELWAFIVGWTIPLEYMIGN-AAVARSWSAYFDNMLDNYIKNTTIGALG 150

  Fly   197 ECDPPRGVVK----MVALVAIVMILFVNCYSVNLGMAVQNVFTAAKLVAVVVVICGGA------- 250
            |...|.|...    :::.:.|.:...|......:...|.:.|....:|.:.:||..|.       
 Worm   151 ELSEPGGFFSTYPDILSFLLICLCACVIAVGPKVSANVNSSFVVLNIVVIFIVIVSGICYADFNN 215

  Fly   251 W--KLMQGNTQHLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIG 313
            |  ....|.:........|.:  .|| ||.|:    :|.|:..|....||:|:|.:.:|.:..:.
 Worm   216 WTGTTSDGRSMFFPFGLTGTL--TGA-ATCFF----SYIGFEVLATAGEEVKSPHRTIPVATFLS 273

  Fly   314 IPLVTLCYALINISYLAAMSPQEMIESEA-VAVTFGNRILGALAWLMPLSVTISTFGSANGTLFA 377
            |.::...|.|:: |.|..|.|.:.:.:.| .|..|..|....:.:::.:...|....:....:||
 Worm   274 IGVIMTLYILVS-STLTLMVPYDQVHTTAPFAEAFSARGCTTVMYIISIGALIGLTNNLVTGVFA 337

  Fly   378 AGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTAWIFYGG 442
            ..|..:|.:.:|.:...|::|......|...::..:|:.:.:.|...|::|::|.|......|..
 Worm   338 LPRAVYAMADDGLIFKWLAHVTSSTKVPLNAIVIFTLLNAIIALIFDIEALVEFLSIGTLFAYSF 402

  Fly   443 AMLALIVMRYTKP----------------------NY--PRPYKVPIIIPVVVLVISVYLVAAPI 483
            ...:::|:||...                      |:  ..|....|.:.|..|:.|.:.:|. .
 Worm   403 VSGSVLVLRYQSAPIDGDGKRMDNGGELSSWIPARNFWESLPAGTSISLGVAALIGSFFWLAF-T 466

  Fly   484 FETPRVEYLYALLFI-FAGLI-------------------FYVPFV 509
            |.|...|:.|..:.| |.||:                   |.||||
 Worm   467 FRTGFYEHWYGQISIGFNGLLIVLVMAFILGHQQNSLETSFKVPFV 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbmNP_727785.1 2A0308 53..532 CDD:273332 114/501 (23%)
B0454.6NP_494428.1 2A0303 7..559 CDD:273330 114/501 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165409
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53617
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2200
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.880

Return to query results.
Submit another query.