DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9400 and vap-1

DIOPT Version :9

Sequence 1:NP_572957.1 Gene:CG9400 / 32385 FlyBaseID:FBgn0030562 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_001024553.1 Gene:vap-1 / 181768 WormBaseID:WBGene00006886 Length:424 Species:Caenorhabditis elegans


Alignment Length:317 Identity:74/317 - (23%)
Similarity:115/317 - (36%) Gaps:91/317 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 IETITTTTP-------------------ASSGGYCAAALCE-------LYN-----GTHLVHVPH 69
            |.|:..|.|                   ||:.| ||.|||.       :||     ...:::...
 Worm   125 IRTVGLTDPDNKYTNSAMFRFANMANGKASAFG-CAYALCAGKLSINCIYNKIGYMTNAIIYEKG 188

  Fly    70 TACGNNG---SFSPA------C--GPE----------PKLLEMSERRRQLLLDMHNLARSKIASG 113
            .||.::.   ::|.:      |  .|:          |.:.:.|::.||..||.||..|:.:|.|
 Worm   189 DACTSDAECTTYSDSQCKNGLCYKAPQAPVVETFTMCPSVTDQSDQARQNFLDTHNKLRTSLAKG 253

  Fly   114 -NLDGYRSAA------HMPLLRWDTELEQMAALHAKRCQFAHDKCRNTPRFKFSGQNIGYFWIGR 171
             ..||..:.|      .||.|::...:|..|...||.|.:.|......|..   |:|:....|..
 Worm   254 LEADGIAAGAFAPMAKQMPKLKYSCTVEANARTWAKGCLYQHSTSAQRPGL---GENLYMISINN 315

  Fly   172 EFKSHSRRMKSFVINWFREHQD--------ANQSFIDRYHPHPQGKKIGHFTLLVSDRVNRVGCA 228
            ..|..:....|..  |:.|.:|        ..|:..||        .:||:|.:..:....:|| 
 Worm   316 MPKIQTAEDSSKA--WWSELKDFGVGSDNILTQAVFDR--------GVGHYTQMAWEGTTEIGC- 369

  Fly   229 GVRFLEPKSNRFQFMLTCNY-DYNNIFNEPIYQSG---PAGSKCPQHRISEKFPSLC 281
               |:| ....|.:.: |.| ...|..|:.||..|   .|.:.||..:......:||
 Worm   370 ---FVE-NCPTFTYSV-CQYGPAGNYMNQLIYTKGSPCTADADCPGTQTCSVAEALC 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9400NP_572957.1 SCP_euk 96..249 CDD:240180 43/168 (26%)
vap-1NP_001024553.1 SCP 31..175 CDD:214553 13/50 (26%)
SCP 234..386 CDD:214553 43/170 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14643
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10334
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X35
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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