DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRNA-cap and AT5G01290

DIOPT Version :9

Sequence 1:NP_572952.1 Gene:mRNA-cap / 32379 FlyBaseID:FBgn0030556 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_195749.2 Gene:AT5G01290 / 831240 AraportID:AT5G01290 Length:657 Species:Arabidopsis thaliana


Alignment Length:658 Identity:215/658 - (32%)
Similarity:310/658 - (47%) Gaps:117/658 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RDRERGS-----GPLPNRWLYCP---RKSDTIIAERFLAFKTPLSNNFHDKMPIECTFQPEMLFE 62
            ||:.|.:     ..||..||.||   .:...||..     |.|||.::::.:|      |...:.
plant    56 RDQYRDTRVYDQSKLPQGWLDCPGFGLEIGCIIPS-----KVPLSESYNEHVP------PGKRYS 109

  Fly    63 YCKTLK------VKLGLWVDLTNTKRFYDRSAVEELGAKYIKLQCRGHGETPSPEQTHSFI-EIV 120
            :.:.::      .||||.:|||||.|:|....:::.|.|::|:.|||....|.....::|: |::
plant   110 FKQVVRNQRINGRKLGLVIDLTNTTRYYPTLDLKKDGIKHVKIACRGRDAVPDNVSVNTFVNEVL 174

  Fly   121 DNFINER-PFDVIAVHCTHGFNRTGFLIVCYLVERL-DCSVSAALAIFASARPPGIYKQDYINEL 183
            ...:|:: ....:.||||||.|||||:||.||:..: ..:|:.||.:|:.||||||||.|||:.|
plant   175 QFVLNQKHAKKYVLVHCTHGHNRTGFMIVHYLMRSMPTMNVTQALKLFSDARPPGIYKPDYIDAL 239

  Fly   184 YKRYEDTN-AAPAAPEQPNWCLDYD-DGNGDGFVQDNSSSTSQQAGEQDDDAEEVEGEDAGGDCD 246
            |..|.:.. .:...|..|.|....: |.||:. |||:....|     ..|..:|:..|:.....|
plant   240 YTFYHEIKPESVTCPPTPEWKRSAELDLNGEA-VQDDDDDDS-----PPDPVQEINQENVKMSND 298

  Fly   247 ASTSDGQP--RKKRRREMIIKNATFMAGVPGVRQVSDQPRLGDLQRKVQDWCDWKKNGFPGAQPV 309
            .:..|..|  :::..|:...|......|..|..|                        |||:.||
plant   299 DTLGDEIPHYQEEAYRQFCYKMLMMNVGGRGFMQ------------------------FPGSHPV 339

  Fly   310 SMDRENIKRLSEIPYRVSWKADGTRYMML--IDGRDEVYFFDRNHSCFQVENVTF-VESRNLNEH 371
            |:|||:::.|.:..|..:|||||||||||  |||   .|..||:   |:...|.. ...::..|.
plant   340 SLDRESLQLLRQRYYYATWKADGTRYMMLLTIDG---CYLIDRS---FKFRRVQMRFPCKHSREG 398

  Fly   372 LDG-----TLVDGEMVLDKIGETVTP---------RYLIYDIVRLSNRDVRDEPFYPNRLDYIKT 422
            :..     ||:|||||:|      ||         |||:||:|.::...|.:..|. .|.:....
plant   399 ISDKVHHYTLLDGEMVID------TPTGEQGEARRRYLVYDMVAINGESVVERTFC-ERWNMFVR 456

  Fly   423 EVIGPRIL-GMKHGIINQRLQAFSVRGKDFWDIWMSARLLGEKFSRTLAHEPDGLIFQPSKQPYT 486
            ||||||.. .::.......|:.|:||.|.||.:....:||..... :|:||.||||||....||.
plant   457 EVIGPRAAEKLRSHCYRYDLEPFAVRMKGFWLLSTVEKLLKNTIP-SLSHEADGLIFQGWDDPYV 520

  Fly   487 AGTCSDVFKWKPHELNSVDFRLKIITERGEGLLTKKVGFLYVGGHDAPYGRMQRLTKETRE---- 547
            ..|...:.|||..|:|||||..::..|.|.|.|     ||:..|...   .|:..:.|.|:    
plant   521 PRTHKGLLKWKYAEMNSVDFLYEMGEEEGRGFL-----FLHERGKKK---LMEGYSVEFRDDSDP 577

  Fly   548 --LDNRIVECTMNQFGN-WDFMRERTDKKNPNSYNTARSVVDSIKHPVTKEYLLNFIA------- 602
              .:.:||||..::... |..||.|.||..||..||||.|:.||...:|:|.||..|.       
plant   578 SSYNGKIVECAWDKDKKVWFSMRIRVDKTTPNDINTARKVIKSINDNITEEVLLQEIREIIRLPM 642

  Fly   603 -SSGYRND 609
             :...|||
plant   643 YADRIRND 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRNA-capNP_572952.1 PTPc <116..171 CDD:304379 23/57 (40%)
mRNA_cap_enzyme 307..497 CDD:279649 75/207 (36%)
mRNA_cap_C 502..597 CDD:281856 36/101 (36%)
AT5G01290NP_195749.2 PTPc 123..227 CDD:304379 41/103 (40%)
Adenylation_mRNA_capping 314..532 CDD:185706 84/255 (33%)
mRNA_cap_C 536..630 CDD:281856 36/101 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 110 1.000 Domainoid score I2104
eggNOG 1 0.900 - - E1_COG5226
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37851
Inparanoid 1 1.050 273 1.000 Inparanoid score I903
OMA 1 1.010 - - QHG57294
OrthoDB 1 1.010 - - D1544021at2759
OrthoFinder 1 1.000 - - FOG0003817
OrthoInspector 1 1.000 - - otm2482
orthoMCL 1 0.900 - - OOG6_101990
Panther 1 1.100 - - O PTHR10367
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2661
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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