DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRNA-cap and cel-1

DIOPT Version :9

Sequence 1:NP_572952.1 Gene:mRNA-cap / 32379 FlyBaseID:FBgn0030556 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_001020979.1 Gene:cel-1 / 172814 WormBaseID:WBGene00000466 Length:623 Species:Caenorhabditis elegans


Alignment Length:666 Identity:259/666 - (38%)
Similarity:359/666 - (53%) Gaps:87/666 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RGSGP------LPNRWLYCPRKSDTIIAERFLAFKTPLSNNFHDKMPIECTFQ--PEMLFEYCKT 66
            ||..|      ||:|||:|| |:.|:|...|..|||||. ..:|....|..:|  |..:|.:...
 Worm     4 RGPTPDKARMGLPDRWLHCP-KTGTLINNLFFPFKTPLC-KMYDNQIAERRYQFHPAEVFSHPHL 66

  Fly    67 LKVKLGLWVDLTNTKRFYDRSAVEELGAKYIKLQCRGHGETPSPEQTHSFIEIVDNFINERPFDV 131
            ...|:|||:|||||.|:|.|..|.|....|.|::..|.|.:|:.|.|.:||::|..|..:.|..|
 Worm    67 HGKKIGLWIDLTNTDRYYFREEVTEHECIYHKMKMAGRGVSPTQEDTDNFIKLVQEFHKKYPDRV 131

  Fly   132 IAVHCTHGFNRTGFLIVCYLVERLDCSVSAALAIFASARPPGIYKQDYINELYKRYEDT-NAAPA 195
            :.||||||||||||||..||.:..:..:.||:..||..|..||||||||::|:.||:.| :....
 Worm   132 VGVHCTHGFNRTGFLIAAYLFQVEEYGLDAAIGEFAENRQKGIYKQDYIDDLFARYDPTEDDKIL 196

  Fly   196 APEQPNWCLDYDDGNGDGFVQDNSSSTSQQA----GEQDDDAEEVEGEDAGGDCDASTSDGQPRK 256
            |||:|:|..:...|.... :.:...|||||.    |..:.:..::.|   |||            
 Worm   197 APEKPDWEREMSIGMSTQ-IDNGRPSTSQQIPATNGNNNQNGNQLSG---GGD------------ 245

  Fly   257 KRRREMIIKNATFMAG-VPGVRQVSDQPRLGDLQRKVQDWCDWKKNGFPGAQPVSMDRENIKRLS 320
                    .:..||.| :.||:...|:.:...||.|:::.|.:.|.||||.||||:.|.||..|.
 Worm   246 --------NSKLFMDGLIRGVKVCEDEGKKSMLQAKIKNLCKYNKQGFPGLQPVSLSRGNINLLE 302

  Fly   321 EIPYRVSWKADGTRYMMLIDGRDEVYFFDRNHSCFQVENVTFVESRNLNEHLDGTLVDGEMVLDK 385
            :..|.|||||||.||::.|:..| ||.|||::..|::||:.|| ::| ...|..||||.|:::||
 Worm   303 QESYMVSWKADGMRYIIYINDGD-VYAFDRDNEVFEIENLDFV-TKN-GAPLMETLVDTEVIIDK 364

  Fly   386 I----GETVTPRYLIYDIVRLSNRDVRDEPFYPNRLDYIKTEVIGPRILGMKHGIINQRLQAFSV 446
            :    .....||.|||||:|.::.:|..|||| .|.:.||||:|..|....|.|.:....|..||
 Worm   365 VEINGAMCDQPRMLIYDIMRFNSVNVMKEPFY-KRFEIIKTEIIDMRTAAFKTGRLKHENQIMSV 428

  Fly   447 RGKDFWDIWMSARLLGEKFSRTLAHEPDGLIFQPSKQPYTAGTCSDVFKWKPHELNSVDFRLKII 511
            |.|||:|:..:|:|.|.||.:.:.||.|||||||.|..|..|.|..|.||||...|||||.||:.
 Worm   429 RRKDFYDLEATAKLFGPKFVQHVGHEIDGLIFQPKKTKYETGRCDKVLKWKPPSHNSVDFLLKVE 493

  Fly   512 TERGEGLLTKKVGFLYVGGHDAPYGRMQRLTKETRELDNRIVECTM---NQFG---NWDFMRERT 570
            .:..||:|.:.:|:|:|.....|:|.| :.|...::..|:|:|||:   || |   .|.||||||
 Worm   494 KKCKEGMLPEWIGYLFVQNLSDPFGTM-KATATLKKYHNKIIECTLLVDNQ-GRPKEWKFMRERT 556

  Fly   571 DKKNPNSYNTARSVVDSIKHPVTKEYLLNFIASSGYRNDHVMMPPPINSHNQNH----------N 625
            ||..||...||.:||:::.:|||:.||:.::                     ||          .
 Worm   557 DKSLPNGLRTAENVVETMVNPVTETYLIEYV---------------------NHALRVLKRAAAA 600

  Fly   626 HNHFYPHGHGQHQRRP 641
            |.|...|....|:..|
 Worm   601 HRHHQIHQQQLHEGEP 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRNA-capNP_572952.1 PTPc <116..171 CDD:304379 26/54 (48%)
mRNA_cap_enzyme 307..497 CDD:279649 89/193 (46%)
mRNA_cap_C 502..597 CDD:281856 43/100 (43%)
cel-1NP_001020979.1 PTPc <115..171 CDD:304379 26/55 (47%)
mRNA_cap_enzyme 289..479 CDD:279649 89/193 (46%)
mRNA_cap_C 484..583 CDD:281856 43/100 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156498
Domainoid 1 1.000 160 1.000 Domainoid score I2483
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37851
Inparanoid 1 1.050 414 1.000 Inparanoid score I1030
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57294
OrthoDB 1 1.010 - - D1544021at2759
OrthoFinder 1 1.000 - - FOG0003817
OrthoInspector 1 1.000 - - oto20453
orthoMCL 1 0.900 - - OOG6_101990
Panther 1 1.100 - - LDO PTHR10367
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R688
SonicParanoid 1 1.000 - - X2661
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.940

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