DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRNA-cap and mRNA-cap

DIOPT Version :10

Sequence 1:NP_572952.1 Gene:mRNA-cap / 32379 FlyBaseID:FBgn0030556 Length:649 Species:Drosophila melanogaster
Sequence 2:XP_314026.5 Gene:mRNA-cap / 1274820 VectorBaseID:AGAMI1_007049 Length:606 Species:Anopheles gambiae


Alignment Length:618 Identity:334/618 - (54%)
Similarity:426/618 - (68%) Gaps:28/618 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RGSGPLPNRWLYCPRKSDTIIAERFLAFKTPLSNNFHDKMPIECTFQPEMLFEYCKTLKVKLGLW 74
            ||.||:|:|||:||||||:|||:||:||||||..:|..:||::|:|.|.|||:..|..|.::|||
Mosquito     3 RGPGPIPHRWLHCPRKSDSIIADRFIAFKTPLKRDFQSQMPVQCSFAPSMLFDLMKRQKRRIGLW 67

  Fly    75 VDLTNTKRFYDRSAVEELGAKYIKLQCRGHGETPSPEQTHSFIEIVDNFINERPFDVIAVHCTHG 139
            :|||||.||||::.:|:.||.||||:|||||||||.|...||||||:.||.|.|.|||.||||||
Mosquito    68 IDLTNTNRFYDKNEIEDAGATYIKLKCRGHGETPSVEHVRSFIEIVEEFIQEHPLDVIGVHCTHG 132

  Fly   140 FNRTGFLIVCYLVERLDCSVSAALAIFASARPPGIYKQDYINELYKRYEDTNAAPAAPEQPNWCL 204
            |||||||||.|:||||||:|.||:..||.||||||||.||:.||:.||.|...||..||.|.|||
Mosquito   133 FNRTGFLIVSYMVERLDCAVDAAVMAFAQARPPGIYKGDYLKELFARYGDVEDAPPPPELPAWCL 197

  Fly   205 DYDDGNGDGFVQDNSSSTSQQAGEQDDDAEEVEGEDAGGDCD-------ASTSDGQPR--KKRRR 260
            :||||       |..::.:.|..|||||      :|.||:..       :...:|.|:  |:.:|
Mosquito   198 EYDDG-------DQPNNGAHQLVEQDDD------DDGGGEESRPRGSKRSQEGEGAPQTPKRFKR 249

  Fly   261 EMIIKNATFMAGVPGVRQVSDQPRLGDLQRKVQDWCDWKKNGFPGAQPVSMDRENIKRLSEIPYR 325
            .....||.||..||||..|.|:..:..||.:|::.|..|..||.||||||||..||:.|.|:|||
Mosquito   250 ASYNPNAVFMEDVPGVTLVRDEALIAKLQERVREMCGSKLQGFAGAQPVSMDMHNIRYLKEMPYR 314

  Fly   326 VSWKADGTRYMMLIDGRDEVYFFDRNHSCFQVENVTFVESRNLNEHLDGTLVDGEMVLDKIGE-T 389
            ||||||||||||||....|:||.||::|.|:.|.:.|...::.:.|:..||||||||||..|| .
Mosquito   315 VSWKADGTRYMMLIHREGEIYFLDRDNSVFKAEGIRFPTLKDTSVHITDTLVDGEMVLDNYGEGK 379

  Fly   390 VTPRYLIYDIVRLSNRDVRDEPFYPNRLDYIKTEVIGPRILGMKHGIINQRLQAFSVRGKDFWDI 454
            ..||||:||::.|.||:||.:.|:|:||..|..|:|.||...::.|.:::..:.|.||.|.||||
Mosquito   380 KIPRYLVYDVIYLHNREVRKQRFFPDRLGLIDREIIQPRTNAIRQGRLDRESEPFGVRLKQFWDI 444

  Fly   455 WMSARLLGEKFSRTLAHEPDGLIFQPSKQPYTAGTCSDVFKWKPHELNSVDFRLKIITERGEGLL 519
            ..|..|||.||::.|.|||||||||||..||.:|.|..|.|||||.:||:||||.|..|.|:|:|
Mosquito   445 MQSRALLGPKFTKGLGHEPDGLIFQPSIDPYESGVCPRVLKWKPHHMNSIDFRLVIKEETGQGML 509

  Fly   520 TKKVGFLYVGGHDAPYGRMQRLTKETRELDNRIVECTMNQFGN-WDFMRERTDKKNPNSYNTARS 583
            ..|.|.|||||.:..||.: :||||.|:|:|:|:||   :|.| |..|||||||..||||.||::
Mosquito   510 PTKKGLLYVGGMEHSYGEI-KLTKELRKLNNKIIEC---KFENGWVLMRERTDKSFPNSYETAKN 570

  Fly   584 VVDSIKHPVTKEYLLNFIASSGYRNDHVMMPPP 616
            |.:||::|||::.||..||..|:|:|..:||||
Mosquito   571 VWESIRNPVTEDRLLTLIAKDGFRSDAELMPPP 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRNA-capNP_572952.1 Mce1_N 18..185 CDD:350502 112/166 (67%)
mRNA_cap_enzyme 307..497 CDD:396068 102/190 (54%)
mRNA_cap_C 502..597 CDD:461093 52/95 (55%)
mRNA-capXP_314026.5 None

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