DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxl4 and VFB2

DIOPT Version :10

Sequence 1:NP_572951.1 Gene:Fbxl4 / 32378 FlyBaseID:FBgn0030555 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_566928.1 Gene:VFB2 / 824170 AraportID:AT3G50080 Length:522 Species:Arabidopsis thaliana


Alignment Length:379 Identity:92/379 - (24%)
Similarity:144/379 - (37%) Gaps:90/379 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 DLPFEILLRILSYLDLKSLFRVGHVSRTFYDI---SRHPLLYAEISLKPYWDVASSELLCTLARR 389
            :||.:.|..|..:|......|...||:.:..:   :||     .:||.     |.||:|..|   
plant    43 NLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRH-----RLSLD-----AKSEILPFL--- 94

  Fly   390 ATMLRKLDLSWCGGFGNVSPTEFKKFLTQRGDNLTHLRLNSCK---FLNASCIENVGIVCDNLIE 451
                               |..|.:|     |::|.|.|...:   .|:...:..|.|.|.|||.
plant    95 -------------------PCIFNRF-----DSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIR 135

  Fly   452 LSLRNCATEPPLLNFSCLANLKNLERLDLFQTYFETELLLSMLEGNRKLKHLNL----------- 505
            :.||.|.....|...|...|.|:|.:|......|..:.:.:|||..:.|:.|:|           
plant   136 VKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKRIRGLHELAE 200

  Fly   506 ------------AFCGVSVNMDNVAAHLATYNTQLIS----LDLWKAHF-LSSRGLQSLA--RLH 551
                        .|....||.....:.:||...:.:.    |..|...| ::..|..||.  ||.
plant   201 PIKLSLSASLRSVFLKELVNGQVFGSLVATRTLKKVKIIRCLGNWDRVFEMNGNGNSSLTEIRLE 265

  Fly   552 QLEELDLGW-----CMREASL---------GDGLFQLLSNCPKLKKLFLSA--VRGTTERDLMHI 600
            :|:..|:|.     |....:|         ..||..::..|..|:||.:..  |:...::.||.:
plant   266 RLQVTDIGLFGISKCSNLETLHIVKTPDCSNLGLASVVERCKLLRKLHIDGWRVKRIGDQGLMSV 330

  Fly   601 AALGKNLEQLDLMGILNITHERVYDILVNCPKLQLLDLSFCDNIMDRDFDLLAE 654
            |....||::|.|:|: :.|:..:..|..||.||:.|.|.....|.|.:...:||
plant   331 AKHCLNLQELVLIGV-DATYMSLSAIASNCKKLERLALCGSGTIGDAEIGCIAE 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxl4NP_572951.1 F-box-like 326..370 CDD:463757 10/44 (23%)
leucine-rich repeat 393..422 CDD:275381 3/28 (11%)
leucine-rich repeat 423..442 CDD:275381 4/21 (19%)
LRR <427..>639 CDD:443914 64/260 (25%)
leucine-rich repeat 449..474 CDD:275381 8/24 (33%)
leucine-rich repeat 475..499 CDD:275381 6/23 (26%)
leucine-rich repeat 500..527 CDD:275381 8/49 (16%)
leucine-rich repeat 528..552 CDD:275381 8/30 (27%)
leucine-rich repeat 553..580 CDD:275381 8/40 (20%)
leucine-rich repeat 581..606 CDD:275381 7/26 (27%)
leucine-rich repeat 607..632 CDD:275381 8/24 (33%)
leucine-rich repeat 633..652 CDD:275381 5/18 (28%)
VFB2NP_566928.1 F-box_AtTIR1-like 44..79 CDD:438930 8/34 (24%)
AMN1 <119..>187 CDD:187754 20/67 (30%)
leucine-rich repeat 133..158 CDD:275381 8/24 (33%)
leucine-rich repeat 159..183 CDD:275381 6/23 (26%)
leucine-rich repeat 233..258 CDD:275381 4/24 (17%)
leucine-rich repeat 259..282 CDD:275381 7/22 (32%)
AMN1 263..>410 CDD:187754 34/122 (28%)
leucine-rich repeat 283..308 CDD:275381 4/24 (17%)
leucine-rich repeat 309..336 CDD:275381 7/26 (27%)
leucine-rich repeat 337..361 CDD:275381 8/24 (33%)
leucine-rich repeat 362..387 CDD:275381 7/22 (32%)
leucine-rich repeat 388..412 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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