DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxl4 and Lrrc29

DIOPT Version :10

Sequence 1:NP_572951.1 Gene:Fbxl4 / 32378 FlyBaseID:FBgn0030555 Length:669 Species:Drosophila melanogaster
Sequence 2:XP_006255593.1 Gene:Lrrc29 / 502201 RGDID:1593150 Length:673 Species:Rattus norvegicus


Alignment Length:682 Identity:155/682 - (22%)
Similarity:239/682 - (35%) Gaps:224/682 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 VPTEV--------AIFETFNPGAVVRIWAYGLTKNWTCLWEATESDLSRPPPLDSRRFAPSLKKT 206
            :|.||        :|.|..:|             .||   .:..||:.||..:.|       |..
  Rat     5 LPLEVYSEAGEGKSILEVLDP-------------RWT---RSQFSDILRPRGIGS-------KAL 46

  Fly   207 TMLTKTLRIDFNHSRLNYYTEI-------DAIMLCGRTVTKTQNLLAKQQITQHSRTLVSPPPDA 264
            .:||....:.|:...|.|....       :|.::........||.|.:..: :::..:.|....|
  Rat    47 RVLTPLKHLIFSPQMLTYILSFLPLSDQKEASLVSRAWYYAAQNALRETNV-RYNIPVSSASLSA 110

  Fly   265 IGSTSGDGSGGSISHKLRTLKFQPNCGEDGATKLHEFINN---DLSQFLADNCVDGEAAAPQICL 326
            |.|.   |..|.....|..|        ||:...|:.:.:   .|...|...|:.|  .:|    
  Rat   111 IKSL---GRRGISCISLTNL--------DGSPASHQVLQSVAYHLGPHLQSLCLGG--GSP---- 158

  Fly   327 TDLPFEILL---RILSYLDL---KSLFRVG----------------------------------- 350
            |:..|..|:   .:|..|||   .|||..|                                   
  Rat   159 TEASFLALILGCPVLRTLDLSGCNSLFTSGTLLAQPETAQCVRKALSGLRDLNLAGLRDLTDLSF 223

  Fly   351 -HVSRTFYDISRHPLLYAEIS--LKPYWDVASSE-----------LLCTLARRATMLRKLDLSWC 401
             |:|..|..:.|..|.|..::  |...|...|.:           ||..:..||..||.||||  
  Rat   224 NHLSSCFPSLERLSLAYCHLTFELGSTWGSTSPQASSPSQLSFHNLLQFIKERAGTLRALDLS-- 286

  Fly   402 GGFGNVSPTEFKKFLTQ-RGDNLTHLRLNSCKFLNASCIENVGIVC---DNLIELSLRNCA--TE 460
               |...|.|..:.|.| .|..|..|.|||||.|::   |.|..:|   ..|..|.|..|:  |:
  Rat   287 ---GTGLPPEALQALGQVTGLKLEELNLNSCKDLSS---EAVATLCRQQPGLTSLDLSGCSELTD 345

  Fly   461 PPLLNFS---------------------CLA--NLKNLERLDLFQTYFETELLLSMLEGNRK--- 499
            ..||..|                     |:|  .|..|:.||:.:....:...|:.:.|:.:   
  Rat   346 RALLAVSRGLHHLRHLSLKKLQRLTDAGCIALGALHELQSLDMAECCLVSGRELAQVLGSVRRAP 410

  Fly   500 --LKHLNLAFC---------------GVSVNMDNVAAHLATYN-------TQLISLDLWKAHF-- 538
              |..|.||:|               |.|:.:.::::.:|..|       |.||.|.:.:..:  
  Rat   411 PALTSLRLAYCSSLKDASVLSMIPALGPSLKVLDLSSCVALTNQTMQAICTYLIHLSVLRLAWCK 475

  Fly   539 -LSSRGLQSL----------ARLHQ--------------------------LEELDLGWC--MRE 564
             |...||..|          .:|||                          |:||||..|  :.:
  Rat   476 ELQDWGLLGLKEPSDEPVLNPQLHQEVENQAPDHQEPSSEPQGSSLLMLQALQELDLTACSKLTD 540

  Fly   565 ASLGDGLFQLLSNCPKLKKLFLSAVRGTTERDLMHIAALGKNLEQLDLMGILNITHERVYDILVN 629
            |||...|     ..|:|::|.||.:...|:..|:.:|....:||:|.|....:::.|........
  Rat   541 ASLAKVL-----QFPQLRQLSLSLLPAFTDMGLVAVARGCPSLERLTLSHCSHLSDEGWVQAARL 600

  Fly   630 CPKLQLLDLSFCDNIMDRDFDLLAEWSRQFKV 661
            .|:||.|:||.|..:.::..|.:.:..:|.:|
  Rat   601 WPRLQHLNLSSCSQVTEQTLDTIGQACKQLRV 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxl4NP_572951.1 F-box-like 326..370 CDD:463757 17/85 (20%)
leucine-rich repeat 393..422 CDD:275381 12/29 (41%)
leucine-rich repeat 423..442 CDD:275381 9/18 (50%)
LRR <427..>639 CDD:443914 72/307 (23%)
leucine-rich repeat 449..474 CDD:275381 11/49 (22%)
leucine-rich repeat 475..499 CDD:275381 5/23 (22%)
leucine-rich repeat 500..527 CDD:275381 9/48 (19%)
leucine-rich repeat 528..552 CDD:275381 8/36 (22%)
leucine-rich repeat 553..580 CDD:275381 10/28 (36%)
leucine-rich repeat 581..606 CDD:275381 7/24 (29%)
leucine-rich repeat 607..632 CDD:275381 5/24 (21%)
leucine-rich repeat 633..652 CDD:275381 7/18 (39%)
Lrrc29XP_006255593.1 leucine-rich repeat 124..142 CDD:275381 5/25 (20%)
PPP1R42 <170..410 CDD:455733 60/247 (24%)
leucine-rich repeat 173..206 CDD:275381 8/32 (25%)
leucine-rich repeat 207..232 CDD:275381 3/24 (13%)
leucine-rich repeat 233..279 CDD:275381 10/45 (22%)
leucine-rich repeat 280..300 CDD:275381 10/24 (42%)
AMN1 292..480 CDD:187754 45/190 (24%)
leucine-rich repeat 306..331 CDD:275381 11/27 (41%)
leucine-rich repeat 332..357 CDD:275381 8/24 (33%)
leucine-rich repeat 358..439 CDD:275381 14/80 (18%)
leucine-rich repeat 383..408 CDD:275381 5/24 (21%)
leucine-rich repeat 413..437 CDD:275381 5/23 (22%)
leucine-rich repeat 440..465 CDD:275381 4/24 (17%)
leucine-rich repeat 466..526 CDD:275381 8/59 (14%)
leucine-rich repeat 527..577 CDD:275381 18/54 (33%)
AMN1 <564..>638 CDD:187754 18/69 (26%)
leucine-rich repeat 578..603 CDD:275381 5/24 (21%)
leucine-rich repeat 604..629 CDD:275381 7/24 (29%)
leucine-rich repeat 630..655 CDD:275381 1/3 (33%)

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