DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL38 and pebp1.2

DIOPT Version :9

Sequence 1:NP_511152.2 Gene:mRpL38 / 32375 FlyBaseID:FBgn0030552 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001016825.1 Gene:pebp1.2 / 549579 XenbaseID:XB-GENE-973798 Length:186 Species:Xenopus tropicalis


Alignment Length:181 Identity:48/181 - (26%)
Similarity:80/181 - (44%) Gaps:21/181 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PRVPLNISY-QLDGDSLAPVYNGNVIKPTEAAKAP-QIDFDGLVDPITGQAAGQDTYWTLVASNP 206
            |..||.::| .|..|.|     |.|:.||:....| .|:::|:         .....:|||.::|
 Frog    21 PAQPLLVTYGSLGIDEL-----GQVLTPTQVQSRPSSIEWEGM---------DSSKLYTLVLTDP 71

  Fly   207 DAHYTNGT--AECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGYQRMVFVLYKQQARLDLGSY 269
            ||......  .|..|:.:.|:....::.|.||::|:...||:|.|..|.|:::|:|...|.....
 Frog    72 DAPSRKNPKFREWHHFLVVNMKGNNINSGCVLSDYVGSGPPKGTGLHRYVWLVYEQTEELKCTER 136

  Fly   270 QLAAADYGNLEKRTFSTLDFYRQHQEQLTPAGLAFYQTNWDESLTQFYHDV 320
            .|...   :.|.|....:..:||..:..||.....||..||:.:.:.|..:
 Frog   137 VLCNR---SGEHRGMFKVASFRQKYKLGTPVAGNCYQAEWDDYVPKLYEQL 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL38NP_511152.2 PEBP_euk 146..307 CDD:176644 43/164 (26%)
pebp1.2NP_001016825.1 PEBP_euk 24..171 CDD:176644 43/163 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1557122at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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