DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL38 and PEBP1

DIOPT Version :9

Sequence 1:NP_511152.2 Gene:mRpL38 / 32375 FlyBaseID:FBgn0030552 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_002558.1 Gene:PEBP1 / 5037 HGNCID:8630 Length:187 Species:Homo sapiens


Alignment Length:182 Identity:48/182 - (26%)
Similarity:86/182 - (47%) Gaps:23/182 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PRVPLNISYQLDGDSLAPVYNGNVIKPTEAAKAP-QIDFDGLVDPITGQAAGQDTYWTLVASNPD 207
            |:.||:::|.  |.::..:  |.|:.||:....| .|.:|||         .....:|||.::||
Human    21 PQHPLHVTYA--GAAVDEL--GKVLTPTQVKNRPTSISWDGL---------DSGKLYTLVLTDPD 72

  Fly   208 AHYTNGT--AECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGYQRMVFVLYKQQARLDLGSYQ 270
            |......  .|..|:.:.|:....:|.|.||::|:...||:|.|..|.|:::|:|...|......
Human    73 APSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPI 137

  Fly   271 LA--AADYGNLEKRTFSTLDFYRQHQEQLTPAGLAFYQTNWDESLTQFYHDV 320
            |:  :.|:    :..|....|.::::.:...||.. ||..||:.:.:.|..:
Human   138 LSNRSGDH----RGKFKVASFRKKYELRAPVAGTC-YQAEWDDYVPKLYEQL 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL38NP_511152.2 PEBP_euk 146..307 CDD:176644 43/165 (26%)
PEBP1NP_002558.1 PEBP_euk 23..171 CDD:176644 43/165 (26%)
Interaction with RAF1. /evidence=ECO:0000269|PubMed:18294816 93..134 14/40 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1881
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1557122at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

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