DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpL38 and Pebp1

DIOPT Version :10

Sequence 1:NP_511152.2 Gene:mRpL38 / 32375 FlyBaseID:FBgn0030552 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_063127302.1 Gene:Pebp1 / 29542 RGDID:62017 Length:214 Species:Rattus norvegicus


Alignment Length:207 Identity:36/207 - (17%)
Similarity:55/207 - (26%) Gaps:111/207 - (53%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PRVPLNISY-QLDGDSLAPVYNGNVIKPTEAAKAP-QIDFDGLVDPITGQAAGQDTYWTLVASNP 206
            |:..|.:.| .:..|.|     |.|:.||:....| .|.:||| ||        ...:|||.::|
  Rat    21 PQHALRVDYGGVTVDEL-----GKVLTPTQVMNRPSSISWDGL-DP--------GKLYTLVLTDP 71

  Fly   207 DAHYTN----------------------------------------------------------- 212
            ||....                                                           
  Rat    72 DAPSRKDPKFRPVGGKVGRGYHPDILNLVEVPAGQGCIDLPGLQLVCSAGETASAPGMGSLGVQP 136

  Fly   213 ---------GTAECL---------------------------HWFIANIPNGKVSEGQVLAEYLP 241
                     .:|.|.                           |:.:.|:....:|.|.||:||:.
  Rat   137 SCVLVLPSVSSASCSPAVEDPRCTPPSFGAQSPCSLLCREWHHFLVVNMKGNDISSGTVLSEYVG 201

  Fly   242 PFPPRGVGYQRM 253
            ..||:..|.:|:
  Rat   202 SGPPKDTGKERL 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL38NP_511152.2 PEBP_euk 146..307 CDD:176644 35/205 (17%)
Pebp1XP_063127302.1 None

Return to query results.
Submit another query.