DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL38 and Pbp2

DIOPT Version :10

Sequence 1:NP_511152.2 Gene:mRpL38 / 32375 FlyBaseID:FBgn0030552 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001099226.1 Gene:Pbp2 / 246145 RGDID:621707 Length:187 Species:Rattus norvegicus


Alignment Length:177 Identity:49/177 - (27%)
Similarity:82/177 - (46%) Gaps:19/177 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PRVPLNISYQLDGDSLAPVYNGNVIKPTEAAKAP-QIDFDGLVDPITGQAAGQDTYWTLVASNPD 207
            |:..|.::|.  |..::.:  |.|:.||:....| .|.:||| ||        ...:||:.::||
  Rat    21 PQHLLRVTYA--GAEVSEL--GQVLTPTQVKNRPSSITWDGL-DP--------GKLYTLILTDPD 72

  Fly   208 AHYTNGT--AECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGYQRMVFVLYKQQARLDLGSYQ 270
            |......  .|..|:.:.|:....:|.|:||::|:...||:|.|..|.|:::|:|...|......
  Rat    73 APSRKEPIYREWHHFLVVNMKGNDISSGKVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLKCDEPI 137

  Fly   271 LAAADYGNLEKRTFSTLDFYRQHQEQLTPAGLAFYQTNWDESLTQFY 317
            |.... || ::..|....|.:::......||.. ||..||..:.:.|
  Rat   138 LTNRS-GN-QRGKFKAAAFRKKYHLGAPVAGTC-YQAEWDSYVPKLY 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL38NP_511152.2 PEBP_euk 146..307 CDD:176644 44/163 (27%)
Pbp2NP_001099226.1 PEBP_euk 23..171 CDD:176644 44/163 (27%)

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