DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL38 and pebp1.1

DIOPT Version :9

Sequence 1:NP_511152.2 Gene:mRpL38 / 32375 FlyBaseID:FBgn0030552 Length:416 Species:Drosophila melanogaster
Sequence 2:XP_002938131.1 Gene:pebp1.1 / 100497751 XenbaseID:XB-GENE-22069563 Length:185 Species:Xenopus tropicalis


Alignment Length:182 Identity:42/182 - (23%)
Similarity:77/182 - (42%) Gaps:30/182 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PRVPLNISYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWTLVASNPDA 208
            |:.||.:::    .|:.....|.|:.||:....|.|:::.:         .....:|::.::|| 
 Frog    21 PKYPLKVAF----GSVCVEELGQVLTPTQVQHCPNIEWESM---------DSSKLYTVIFTDPD- 71

  Fly   209 HYTNGTAEC----LHWFIA-NIPNGKVSEGQVLAEYLPPFPPRGVGYQRMVFVLYKQQARLDLGS 268
              .....||    .|.|:| |:....:|.|.:|..|:...|.:|.|..|...::|:|..|:    
 Frog    72 --VPSRKECHLGEWHHFLAVNVKGNDLSSGCILTAYVGSGPGKGTGLHRYTILVYEQAGRV---- 130

  Fly   269 YQLAAADYGNL---EKRTFSTLDFYRQHQEQLTPAGLAFYQTNWDESLTQFY 317
             |......||.   .:..|...:|.::::.....||..| |..||:.:.:.|
 Frog   131 -QCTERILGNTSAEHRGKFKASEFRKKYKLAAPIAGTCF-QAEWDDHVPKLY 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL38NP_511152.2 PEBP_euk 146..307 CDD:176644 37/168 (22%)
pebp1.1XP_002938131.1 PEBP_euk 24..170 CDD:176644 37/167 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1557122at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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