DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11674 and Stab2

DIOPT Version :9

Sequence 1:NP_572948.1 Gene:CG11674 / 32374 FlyBaseID:FBgn0030551 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_038934441.1 Gene:Stab2 / 282580 RGDID:628822 Length:2569 Species:Rattus norvegicus


Alignment Length:327 Identity:72/327 - (22%)
Similarity:106/327 - (32%) Gaps:102/327 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LSCSSD--AQCAQFERGRCVDMACICTARGSGERVPCTPLEERLKLTNI-----------IGGAC 78
            :|||:.  ::|....:...:..:|..::|....:..|.      :..|:           .|..|
  Rat   682 VSCSTKHWSKCPADSKPATIFSSCFYSSRVRNLKSGCA------RYCNVTVEIPRCCKGFFGPDC 740

  Fly    79 -PCP----MPNAICHTRWQ---------QCHCSEGHVSSDDRRRCLPAVVPVGGSCEFQQQCQRA 129
             |||    .|   |....|         .|.|.:|.               .|..|:|   |...
  Rat   741 TPCPGGFLTP---CSGNGQCMDGLAGNGTCICQDGF---------------QGSMCQF---CSDP 784

  Fly   130 DRFSSCIGNQCLCL-----NQFEFHEGRCLSVLQSSCLEDKDCGSCGASICLTKTKRCGCSKNFV 189
            :|:.......|||:     |:.: .:|.|||   .:|.|    |:.| ..|..:|..||....|.
  Rat   785 NRYGPRCNRTCLCVHGTCDNRLD-SDGACLS---GTCRE----GTAG-RFCDKQTSACGPYVQFC 840

  Fly   190 HNH------NMT-KCIKGSAY---GDTCEHSSPCKLNLGADGRCLDHL-CVCRSTHYPKRVANEV 243
            |.|      |.| .|:....|   |..|....|| |.|.:.|.|..:. |:..||.....|..:.
  Rat   841 HIHASCEYSNKTASCVCNEGYEGDGVLCSKKDPC-LGLTSRGGCSPNAECIQTSTGTYSCVCQQG 904

  Fly   244 AKDENDDLDAVNNLERITCAPIVPFGALCRNDSECRMQPMDQENATASIGHPMVCNWGECSCSKT 308
            ......|...:||     |  ::|....|.:::.|......|               .||.|.|.
  Rat   905 WTGNGRDCVGINN-----C--LLPSSGGCHDNATCLYVGPGQ---------------NECECKKG 947

  Fly   309 HR 310
            .|
  Rat   948 FR 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11674NP_572948.1 EB 96..153 CDD:279949 12/61 (20%)
Stab2XP_038934441.1 EGF_CA 254..283 CDD:419698
EGF_3 334..369 CDD:403986
Fasciclin 390..512 CDD:396845
Fasciclin 533..658 CDD:396845
EGF_3 840..868 CDD:403986 7/27 (26%)
EGF_3 881..912 CDD:403986 6/30 (20%)
EGF_3 923..955 CDD:403986 8/42 (19%)
EGF_3 961..997 CDD:403986
Fasciclin 1014..1133 CDD:396845
Fasciclin 1152..1269 CDD:396845
EGF_3 1478..1514 CDD:403986
EGF_3 1520..1556 CDD:403986
EGF_3 1562..1598 CDD:403986
Fasciclin 1629..1729 CDD:396845
Fasciclin 1754..1885 CDD:396845
EGF_CA 2059..2084 CDD:419698
EGF_3 2090..2125 CDD:403986
EGF_3 2131..2168 CDD:403986
Link_Domain 2202..2294 CDD:413401
FAS1 2360..2449 CDD:214719
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.