DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0007 and PRP16

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_013012.3 Gene:PRP16 / 853961 SGDID:S000001794 Length:1071 Species:Saccharomyces cerevisiae


Alignment Length:1061 Identity:465/1061 - (43%)
Similarity:626/1061 - (59%) Gaps:169/1061 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 DDEDGEFG---QRKSDWDMPTPRRHGNKSGDWSVRSGGSRRNHGRQDDTVR-PTP-AHRYNQWAH 294
            ||.:.|..   |:|     |.|.|...|..| .:::...|    :...||: |:| :.:..|..|
Yeast   100 DDNEDELDSPVQKK-----PAPTRTLFKRID-KLKAKQLR----QYSPTVKDPSPNSEQQTQNGH 154

  Fly   295 GRKRSGATPWGEDPESLDLWEEEQRRLDREWYNIDEGYDDENNPFGGPNSEYFRKREEQLEQKRT 359
            ...:.      .:|...::.||     |||||:.|   ||..|....|.|               
Yeast   155 AETKD------YEPTRSEVVEE-----DREWYDND---DDYGNLVPEPLS--------------- 190

  Fly   360 KRISAQQRQNNRDNELWERNRMLTSGVVTLISVNDDFDEEALERVHLLVHHI------IPPFLDG 418
                          ||.|..::|.      :..|.|.|:.....|.|....:      |||||..
Yeast   191 --------------ELPEEAKLLP------VIRNIDNDDALRNTVQLYPIPLKQRMEWIPPFLSK 235

  Fly   419 RIVFTKQPEPVV------------------PVKDPTSDMALLARKGSALVRNYREQKERRKAQKK 465
            ..:..|.|..::                  |.::|.|:.:..|::||.||...|...|..:..:.
Yeast   236 FALENKVPTSIIIGSISETSSQVSALSMVNPFRNPDSEFSANAKRGSKLVALRRINMEHIQQSRD 300

  Fly   466 HWELSGTKLGNIMGVQRPQDEDDMRFDKEKDKADYRKDQKFADHMRDQDTG----GKSDFSRKKT 526
            :..:..|.:|.::|::..        :|.|||:    :||..|     ||.    .|.|....| 
Yeast   301 NTTVLNTAMGEVLGLENN--------NKAKDKS----NQKICD-----DTALFTPSKDDIKHTK- 347

  Fly   527 ISEQRRFLPVFASRQELLNVIRENSVIIIVGETGSGKTTQLTQYLHEDGYSK-RG-MIGCTQPRR 589
              ||   ||||..|.:||::||||.|::|:|||||||||||.|||:|:||:. || .|..|||||
Yeast   348 --EQ---LPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVVTQPRR 407

  Fly   590 VAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCT-SERTVIKYMTDGILLRESLRDPELDSYSAIIM 653
            |||:||||||:.||...||::|||:|||||.| ||.|.:|::||||||||:|.|..||.||.:|:
Yeast   408 VAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDDTLDKYSCVII 472

  Fly   654 DEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSSKFATFFGNVPTFTIPGRTFPVDVMFS 718
            ||||||||:||:|.|..:.::|||.|||||:|||||::.||:.||||.|.||||||||||..:::
Yeast   473 DEAHERSLNTDILLGFFKILLARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTIYT 537

  Fly   719 KNTCEDYVESAVKQALQVHLTP--NEGDMLIFMPGQEDIEVTCEVLEERL----------AEIDN 771
            .|..:||||:||.||:::||..  :.||:||||.||||||.|.:.|:|:.          |..:.
Yeast   538 SNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQVYSKKFGTANFEE 602

  Fly   772 APALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGIIYVIDSGYCKLKVYNPR 836
            ...:.||||||.||:|||.||||......||.::||||||||||:.||.||||.||.|||||||:
Yeast   603 INDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPK 667

  Fly   837 IGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALTVPEIQRTNLANTVLLLK 901
            ||:|:|.|.|||:|||:|||||||||.||.||||||:..:|:::...|:||||||||:||:||||
Yeast   668 IGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFKEDMYLQTIPEIQRTNLSNTLLLLK 732

  Fly   902 SLGVVD-LLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMAEFPLDPPQCQMLIVAC 965
            ||.|.| |.:|.|:|.||....|:|||:||.:||:|.:|.||.||.|||:|||.|...::|::|.
Yeast   733 SLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAIDTSGQLTPLGLQMAKFPLQPSLSKILLIAV 797

  Fly   966 RMGCSAEVLIIVSMLSVPSIFYRPKGREDEADGVREKFQRPESDHLTYLNVYQQWRQNNYSSTWC 1030
            |.|||.|:|.||||||||.:|||||.|:.|||..|.||...:|||||.|||::|||.||:||.||
Yeast   798 RNGCSDEMLTIVSMLSVPQVFYRPKERQKEADIARNKFFIAKSDHLTLLNVFEQWRANNFSSHWC 862

  Fly  1031 NEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISCGIDWDIVRKCICSAYFYQAARLKGIGEYVNL 1095
            |:||:..|::.:.|::|.||..|:..|.:.|||.|.||||::|||||.:.:|||::.|:..||:|
Yeast   863 NKHFVQYKSLVRARDIRDQLLTILKSQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHL 927

  Fly  1096 RTGMPCHLHPTSALYGLGTTPDYVVYHELIMTAKEYMQCATAVDGYWLAELGPMFFSVKESGRSG 1160
            :||:...|||||||:|||..|.|||||||:||:|||:.|.|:||.:||.|.|.:.:.:|      
Yeast   928 KTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKEYICCVTSVDPFWLMEYGGLLYDIK------ 986

  Fly  1161 REKKKQAA----------EH---------------LKEMEEQMLK----AQHEMEERKQQAAERE 1196
            |.|..|.|          ||               .|:|.:.:::    ..:..:|.|:|..:::
Yeast   987 RIKNDQEATTTGLFGEHYEHTLDKVEDDIDINIRRCKDMRDSVIQELKMTDNSNKEDKKQKTKKQ 1051

  Fly  1197 EQLATKQEIATPGNATPRRTP 1217
            ..|..|:....|   ..||.|
Yeast  1052 NILNGKENSMKP---FKRRKP 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 123/188 (65%)
DEXDc 551..689 CDD:238005 91/140 (65%)
HELICc 722..870 CDD:238034 92/159 (58%)
HA2 932..1014 CDD:214852 48/81 (59%)
OB_NTP_bind 1048..1148 CDD:285018 56/99 (57%)
PRP16NP_013012.3 HrpA 319..1071 CDD:224557 405/775 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343754
Domainoid 1 1.000 190 1.000 Domainoid score I639
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8512
Inparanoid 1 1.050 757 1.000 Inparanoid score I70
Isobase 1 0.950 - 0 Normalized mean entropy S613
OMA 1 1.010 - - QHG52596
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 1 1.000 - - oto100033
orthoMCL 1 0.900 - - OOG6_100085
Panther 1 1.100 - - LDO PTHR18934
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R986
SonicParanoid 1 1.000 - - X141
TreeFam 00.000 Not matched by this tool.
1514.780

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