DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)G0007 and AT4G01020

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_567206.1 Gene:AT4G01020 / 826439 AraportID:AT4G01020 Length:1787 Species:Arabidopsis thaliana


Alignment Length:1029 Identity:291/1029 - (28%)
Similarity:462/1029 - (44%) Gaps:213/1029 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 SGGSRRNHGRQDDTVRPTPAHRYNQWAHGRKRSGATPWGEDPESLDLWEEEQRRLDREWYNIDEG 331
            |.|.|....|:..:...:..:|||    .|....:.|...    ...|.::..:....  |....
plant     8 SDGGRSTTDRRQQSFPSSSTNRYN----SRSAQSSPPLNH----CTTWNQQHSQYHNT--NFPPN 62

  Fly   332 YDDENNPFGGPNSEYFRKREEQLEQKRTKRISAQQRQNNRDNELWERNRMLTSGVVTLISVNDDF 396
            |..:..|..|.:....|.|...:.|      .......|.|.:|.::..:  ..:..|..:.:  
plant    63 YRRDRAPSSGFSPPVTRARPNFIVQ------LLHPAAANSDTKLSKKQEI--ESIALLCEIPE-- 117

  Fly   397 DEEALERVHLLVHHIIPPF--------------------------LDGRIVFTKQ--PEPVVP-- 431
                 |.||      :|.|                          |.||..|..:  |..|||  
plant   118 -----ESVH------VPQFGCIAASFSFRQWVDARSAVVALWDYRLQGRHDFVPELIPNVVVPSD 171

  Fly   432 ---VKDPTSD------MALLAR-KGSALVRNYREQKERRKAQKKHWELSGTKLGNIMGVQRPQDE 486
               :||...|      ::|:.. :|...||...:.|.|:.|          ...:..|::....|
plant   172 MDELKDRLRDLFSSHVLSLMENGQGVKKVRMEIDDKSRQVA----------SFSSKRGLKFEVFE 226

  Fly   487 DDMRFDKEKDKADYRKDQKFADHMR--------------------DQDTG-----GKSDFSR--K 524
            .....:.|:|....|.|: |.:.|:                    |:|..     |..|:.|  .
plant   227 KKKALEAERDLVVNRLDE-FNNAMKSILRYLIGQDGYEFDVDDEDDEDVAVFSLEGAYDWRRIHY 290

  Fly   525 KTISEQRRF---LPVFASRQELLNVIRENSVIIIVGETGSGKTTQLTQYLHEDGYSKRGMIGCTQ 586
            ..:.|.||.   ||::|.|:::|..|....:::::|||||||:|||.|:|.:.|.:....|.|||
plant   291 LILRECRRLEDGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQ 355

  Fly   587 PRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSERTV---------------IKYMTDGILL 636
            ||::|||::..||.:|.              ..|..|.||               :.||||..||
plant   356 PRKIAAMTLTDRVREES--------------SGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLL 406

  Fly   637 RESLRDPELDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSSKFATFFGNV 701
            :..::|..|...|.:|:||||||||:||:|..|||::::||.||:|::.|||.|:::.:.:..:.
plant   407 QHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATADANQLSQYLFDC 471

  Fly   702 PTFTIPGRTFPVDVMFSKNTCED---------YVESAVKQALQVHLTPNEGDMLIFMPGQEDIEV 757
            ....:.||.|||::::|.:..|:         |....||.|:::|.|..||.:|.|:..|.::|.
plant   472 GILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEW 536

  Fly   758 TCEVLEERLAEIDNAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGIIYV 822
            .|    ||..    ||:...||::.:|..:.|..:|| :..|.||.:.||||||||||:.|:.||
plant   537 AC----ERFV----APSAIALPLHGKLSFEEQFMVFQ-NYPGRRKVIFATNIAETSLTIPGVKYV 592

  Fly   823 IDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALTVPE 887
            ||||..|...|.||.||..|::..:||::|.||:||||||.||:.||||::..: |.:.....||
plant   593 IDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDF-DSMNLNQEPE 656

  Fly   888 IQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGA-LDHTGA--LTTLGRQMA 949
            |:|.:|...:|.:.:||:.::..|.|:|.|..:.|..::..|..||| ::..|.  ||..|..:.
plant   657 IRRVHLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCLV 721

  Fly   950 EFPLDPPQCQMLIVAC---RMGCSAEVLIIVSMLSVPSIFYRPKGRED--EADGVREKFQRPESD 1009
            :..|: |:...||:.|   |||....||..| |.:..|||.|....:|  :||.::.:|.....|
plant   722 KLGLE-PKLGKLILGCFRHRMGKEGIVLAAV-MANASSIFCRVGNFDDKMKADRLKVQFCNDNGD 784

  Fly  1010 HLTYLNVYQQW------RQNNYSSTWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISC---- 1064
            ..|.|:||::|      |:|.    ||.|:.::.|:||:..:..::| :|..::.|:::|.    
plant   785 LFTLLSVYKEWASLPRDRRNK----WCWENSLNAKSMRRCEDTVKEL-EICIERELTLVSPSYWV 844

  Fly  1065 -----GIDWDIVRKCICSAYFYQAARLKGIGEYVNLRTG------------MPCHLHPTSALYGL 1112
                 |...|...|.:.         |..:.|.|.:.||            ....|||:.:|...
plant   845 WNPNEGTKHDKYLKMVI---------LASLAENVAMYTGYDQLGYEVALTSQQVQLHPSCSLLAF 900

  Fly  1113 GTTPDYVVYHELIMTAKEYMQCATAVD--GYWLAELGPMFFSVKESGRSGREKK 1164
            |..|.:||:.||:....:|:.|.||.|  ..::.:..|.|.:.:...|..|.||
plant   901 GQKPSWVVFGELLSIVDQYLVCVTAFDFEALYMLDPPPPFDASQMDERRLRVKK 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 76/203 (37%)
DEXDc 551..689 CDD:238005 60/152 (39%)
HELICc 722..870 CDD:238034 65/156 (42%)
HA2 932..1014 CDD:214852 29/89 (33%)
OB_NTP_bind 1048..1148 CDD:285018 27/122 (22%)
AT4G01020NP_567206.1 DEXDc 302..484 CDD:214692 72/195 (37%)
DEXDc 320..458 CDD:238005 59/151 (39%)
Helicase_C 507..631 CDD:278689 57/132 (43%)
HA2 700..789 CDD:214852 29/90 (32%)
OB_NTP_bind 834..937 CDD:285018 25/111 (23%)
RING 1560..>1588 CDD:238093
IBR 1625..1693 CDD:214763
IBR 1694..1748 CDD:279784
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.