DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0007 and ythdc2

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:XP_004910524.1 Gene:ythdc2 / 779469 XenbaseID:XB-GENE-5881731 Length:1457 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692
DEXDc 551..689 CDD:238005
HELICc 722..870 CDD:238034
HA2 932..1014 CDD:214852
OB_NTP_bind 1048..1148 CDD:285018
ythdc2XP_004910524.1 R3H_DEXH_helicase 76..134 CDD:100077
HrpA 219..>1046 CDD:224557
ANK repeat 535..567 CDD:293786
ANK repeat 569..600 CDD:293786
OB_NTP_bind 1001..1096 CDD:369483
YTH 1316..1447 CDD:367840
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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