DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)G0007 and dhx9

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:XP_002937403.1 Gene:dhx9 / 733723 XenbaseID:XB-GENE-967775 Length:1257 Species:Xenopus tropicalis


Alignment Length:1035 Identity:261/1035 - (25%)
Similarity:432/1035 - (41%) Gaps:253/1035 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 QRKSDWDMPTPRRHGNKSGDWSVRSGGSRRNHGRQDDTVRPTPAH-------------RYNQWAH 294
            :.||| ::|:   .|.:.|| |: .|...::.|....|..|.|.|             |.|...:
 Frog    74 EMKSD-EVPS---LGAEQGD-SI-DGAPVKSEGFSGPTGGPLPPHLSLQAETSDAAPMRANTGCN 132

  Fly   295 GRKRSGATPWGEDPESLDLW-----EEEQRRLDREWYNIDEG----YDDENNPFGGPNSEYFRKR 350
            .....|...|.......|.:     :|.|..|:.|..:::.|    :..||..  ...:::|:|.
 Frog   133 PPAYGGGAQWERGANLKDYYAKRDEQEAQATLESEEVDLNAGLHGNWTLENAK--ARLNQFFQKE 195

  Fly   351 EEQLEQKRT----------------------KRISAQQRQNNRDNELWERNRMLTSGVVTLISVN 393
            :.|.|.|.:                      :||:|::..:|:        ::.....       
 Frog   196 KTQGEYKYSQVGPDHNRSFIAEMTLYVKQLGRRITAREHGSNK--------KLAAQSC------- 245

  Fly   394 DDFDEEALERVHLLVH-HIIPPF------LDGRIV----------FTKQPEPVV---------PV 432
                  ||..|..|.| .:|.|:      .:|..|          ..||.:..:         |.
 Frog   246 ------ALSIVRQLYHLSVIEPYSGLTKKKEGEAVEPYQVNLNPDVVKQLQSTIQELGIELPYPP 304

  Fly   433 KDPTSDMALLARKGSALVRNYREQKERRKA------QKKHWELSGTKLGNIMGVQRPQDEDDMRF 491
            :||:..::|...|   ||.....||:....      .:::|  :.....||       ||..:.|
 Frog   305 QDPSQPVSLNLGK---LVHFEPSQKQSHSGVVPWSPPQENW--NPWTSSNI-------DEGPLAF 357

  Fly   492 -DKEKDKADYRKDQKFADHMRDQDTGGKSDFSRKKTISEQRRFLPVFASRQELLNVIRENSVIII 555
             .:|:..|:.:.:..:  ||:|.:         .|.:...|..|||....:|:::.:..:.|:||
 Frog   358 APQEQISAELKNEHMY--HMQDPN---------MKQVLIDRESLPVKKFEEEIMHAVHNSPVVII 411

  Fly   556 VGETGSGKTTQLTQYLHEDGYSKRGMIGC----TQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIR 616
            .|.||.|||||:.||:.::.........|    |||||::|:|||:||:.|...::|:..||::|
 Frog   412 RGATGCGKTTQVPQYILDECIRNDRAAQCNIVVTQPRRISAVSVAERVAFERGEEIGKSCGYSVR 476

  Fly   617 FEDCTSE-RTVIKYMTDGILLRESLRDPELDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDL 680
            ||..... ...:.:.|.|:|||:  .:..:...|.:|:||.|||.::||.|..:||:::....|:
 Frog   477 FESVLPRPHASMLFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVIQAFPDI 539

  Fly   681 KLIVTSATMDSSKFATFFGNVPTFTIPGRTFPVDVMF---------------------------- 717
            ::|:.|||:|:|.|..:|.|.|...:.||||||...|                            
 Frog   540 RVILMSATIDTSMFCEYFFNCPIIEVFGRTFPVQEYFLEDCIQMTQFIPPPRDKKKKDKDEEGGD 604

  Fly   718 -SKNTC-----EDY--------------------VESAVK--QALQVHLTPNEGDMLIFMPG--- 751
             .:..|     :||                    :|:.:|  :.|.|     .|.:|:|:||   
 Frog   605 DEETNCNLVCGDDYGPETRRSMSQLSEKETPLELIEALLKYIETLNV-----PGAVLVFLPGWNL 664

  Fly   752 ----QEDIEVTCEVLEERLAEIDNAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAET 812
                |:.:|:....         .:.:..|||::||:|.|.|.|:|....||:.|.:::||||||
 Frog   665 IYAMQKHLEMNPHF---------GSHSYCILPLHSQIPRDEQRKVFDPVPDGIIKVILSTNIAET 720

  Fly   813 SLTVDGIIYVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYK 877
            |:|::.::|||||...|:|::.....|........|:.|..||.|||||..||..:.|.::.:: 
 Frog   721 SITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARF- 784

  Fly   878 DELLALTVPEIQRTNLANTVLLLKSLGVVDLLQF--HFMDPPPQDNILNSLYQLWILGALDHTGA 940
            :.|.....|||.||.|....|.:|.|.:..:.||  ..::|||.|.::.:.:.|..|.|||....
 Frog   785 ERLETHLTPEIFRTPLHEVALSIKLLRLGGIGQFLSKAIEPPPLDAVIEAEHTLRELDALDSNDE 849

  Fly   941 LTTLGRQMAEFPLDPPQCQMLIVACRMGCSAEVLIIVSMLSVPSIFYRPKGREDEADG-VREKFQ 1004
            ||.|||.:|:.|::|...:|:|    |||...|...:..:|..:.|..|...|....| |...|.
 Frog   850 LTPLGRILAKLPIEPRLGKMMI----MGCIFYVGDALCTISAATCFPEPFISEGRRLGYVHRNFA 910

  Fly  1005 RPE-SDHLTYLNVYQQWRQ-----NNYSSTWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVIS 1063
            ... |||:..|:|:|.|..     ....:.:|....:::..:|...|.:.|||:|:......   
 Frog   911 GNRFSDHVALLSVFQAWDDARMGGEEAETRFCEHKRLNMATLRMTWEAKVQLKEILVNSGFP--- 972

  Fly  1064 CGIDWDIVRKCICSAYFYQAARLKGIGEYVNLRTGMPCHLHPTSALYGLGTTPDYVVYHE 1123
                    .:|:.:..|.              .||...:|....:|...|..|: |.||:
 Frog   973 --------EECLMTQVFN--------------NTGPDNNLDVVISLLAFGVYPN-VCYHK 1009

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 71/190 (37%)
DEXDc 551..689 CDD:238005 53/142 (37%)
HELICc 722..870 CDD:238034 54/181 (30%)
HA2 932..1014 CDD:214852 28/83 (34%)
OB_NTP_bind 1048..1148 CDD:285018 15/76 (20%)
dhx9XP_002937403.1 DSRM_DHX9_rpt1 3..71 CDD:380683
DSRM_DHX9_rpt2 181..255 CDD:380684 15/96 (16%)
DEXHc_DHX9 333..565 CDD:350730 77/253 (30%)
HrpA 345..>1054 CDD:224557 205/730 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.