DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prp16 and Dhx57

DIOPT Version :10

Sequence 1:NP_572947.1 Gene:Prp16 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_001178836.1 Gene:Dhx57 / 366532 RGDID:1310340 Length:1391 Species:Rattus norvegicus


Alignment Length:1022 Identity:260/1022 - (25%)
Similarity:447/1022 - (43%) Gaps:237/1022 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 VVTLISVNDDFDEEALERVHLLVHHIIPPFLDGR-IVFTKQPEPVVPVKDPTSDMALLARKGSAL 449
            :|...|.|::.....  |:|      |..||.|: :.|.|..||||      ..:..|..:.|.:
  Rat   374 LVAFYSTNENLPLAC--RLH------ISEFLYGKALEFAKTSEPVV------YSLITLLEEESEI 424

  Fly   450 VR-------NY-----------REQKERRKAQKKHWELSGTKLGNIM-------GVQRPQDEDD- 488
            |:       .|           .|.:..:.|.:|....|.|.|.|.|       .::...|||: 
  Rat   425 VKLLTHTQHKYSVPPINVPPAPSETRISKPAYRKPVIPSNTFLSNQMLEGEGLSELEEDADEDEG 489

  Fly   489 ---MRFDKEK----DKADYRKDQKFADHMRDQDTGGKSDFSRKK------TISEQRRFLPVFASR 540
               :..:.|.    .|..||:..:.|..:..:::.....|..|:      .|.::|:.||.:..|
  Rat   490 PAPIVVENESYVNLKKRSYRRCDRPAKSLFAENSKICRQFQMKQASRQFHAILQERQLLPAWEER 554

  Fly   541 QELLNVIRENSVIIIVGETGSGKTTQLTQYLHEDGYS----KRGMIGCTQPRRVAAMSVAKRVSD 601
            :.:|.::.::.|::|.|.||.|||||:.|::.::..:    :...|.||||||::|:|||:||:.
  Rat   555 ETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAK 619

  Fly   602 EMDTQLGEDVGYAIRFEDCTSERTVIKYMTDGILLRESLRDPELDSYSAIIMDEAHERSLSTDVL 666
            |...::|..|||.||.|...|..|.:.|.|.|:|||....|..|...:.||:||.|||:..:|.|
  Rat   620 ERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFL 684

  Fly   667 FGLLREIVARRHDLKLIVTSATMDSSKFATFFGNVPTFTIPGRTFPVDVMFSKN----------- 720
            ..:|::||.:|..|::|:.|||:|:..|:.:|...|..|||||.||||..|.::           
  Rat   685 LLVLKDIVMQRATLQVILMSATLDAGLFSKYFSYCPVITIPGRAFPVDQFFLEDALAVTRYVLQD 749

  Fly   721 ----------------------TCEDYVESAVKQALQVHLTPNE--------------------- 742
                                  |..:.||..::.||  ||...|                     
  Rat   750 GSPYMRSMKQIAKERLKARHNRTALEEVEEDLRLAL--HLQDEEESVKDTIPDQQLDFKQLLVRY 812

  Fly   743 ----------------------------------------GDMLIFMPGQEDIEVTCEVLEER-L 766
                                                    |.:|:|:||..:|::..|.|:.. |
  Rat   813 KGVSKSVIKTMSVMDFEKVNLELIEALLEWIVDGKHSYPPGAILVFLPGLAEIKMLYEQLQSNSL 877

  Fly   767 AEIDNAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGIIYVIDSGYCKLK 831
            .....:....|.|::|.|.|:.|..:|.|...|:.|.:::|||||||:|:|.::||||||..|.|
  Rat   878 FNNRRSHRCVIHPLHSSLSSEEQQAVFVKPPLGVTKIIISTNIAETSITIDDVVYVIDSGKMKEK 942

  Fly   832 VYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALTVPEIQRTNLANT 896
            .|:...||::|:...:|||||.||.|||||...|..:.|:|...|..:||...:|||||..|...
  Rat   943 RYDAGKGMESLEDTFVSQANALQRKGRAGRVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQL 1007

  Fly   897 VLLLKSLGVVDLLQFH--------FMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMAEFPL 953
            .|.:|   ::::...|        .::||..|::..|..:|..||||.....||.||..:|..|:
  Rat  1008 CLRIK---ILEMFSTHNLQSVFSRLIEPPHVDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPV 1069

  Fly   954 DPPQCQMLIVACRMGCSAEVLIIVSMLSVPSIFYRPKGREDEADGVREKFQRPESDHLTYLNVYQ 1018
            |....:::::.....|....|.|.:.|:..|.|..|..:::||:..:.:|....||:|..|..|:
  Rat  1070 DVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFANSDYLALLCAYK 1134

  Fly  1019 QWRQNNYSS-----TWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISCGI------------ 1066
            .|:.:...|     .:|.::|:..:.::::..:::|..::::  ::..:..|:            
  Rat  1135 GWQLSTKESARASYNYCRQNFLSGRTLQEMASLKRQFTELLS--DIGFVKEGLRAKEIEKRAQGG 1197

  Fly  1067 ----------------DWDIVRKCICSAYFYQAARLK-GIGEYVNLRTGMP-------------- 1100
                            :..::...:|:|.:....::| ..|::....:|:.              
  Rat  1198 DGVLDATGEEANTNAENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTK 1262

  Fly  1101 ----CHLHPTSALYGLG--TTPDYVVYHELIMTAKEYMQCATAVDGYWLAELGPMFFSVKESGRS 1159
                .|:||:|..|.:.  .:| |::|||.|.|::.:::..:.|..|.|...|....||      
  Rat  1263 NDGYVHIHPSSVNYQVRHFDSP-YLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVSV------ 1320

  Fly  1160 GREKKKQAAEHLKEMEE---QMLKAQHEMEER-KQQAAEREEQLATK 1202
                :.|....:..:::   :.:.|.|::.|. |:...|.::.|..|
  Rat  1321 ----QLQRGAFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDK 1363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp16NP_572947.1 HrpA 534..>1148 CDD:441249 210/774 (27%)
Dhx57NP_001178836.1 UBA_DHX57 184..221 CDD:270502
RWD_DHX57 245..428 CDD:467661 18/67 (27%)
zf_CCCH_4 308..326 CDD:465719
HrpA 548..>1175 CDD:441249 189/631 (30%)
OB_NTP_bind 1218..1315 CDD:400182 20/97 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.