DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0007 and Dhx40

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_001005873.1 Gene:Dhx40 / 287595 RGDID:1359618 Length:779 Species:Rattus norvegicus


Alignment Length:748 Identity:277/748 - (37%)
Similarity:435/748 - (58%) Gaps:78/748 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 SDFSRKKTISEQRRFLPVF---ASRQELLNVIRENSVIIIVGETGSGKTTQLTQYLHEDGYSKRG 580
            :|...|...|::....|.|   ..|::|:..:|:||.:|:.|.|||||||||.:||:|.|:|:.|
  Rat    35 ADREEKGCTSQEGGTTPTFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG 99

  Fly   581 MIGCTQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSERTVIKYMTDGILLRESLRDPEL 645
            |||.||||:|||:|||:||::||...||..|||.:||:||:|:.|.|||||||.||:..|.||.|
  Rat   100 MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNL 164

  Fly   646 DSYSAIIMDEAHERSLSTDVLFGLLREIVA-----RRHDLKLIVTSATMDSSKFATFFGNVPTFT 705
            :.:|.||:||||||:|:||:|||||:::..     |:..||::|.||||:.:|.:.||||.|.|.
  Rat   165 NKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFD 229

  Fly   706 IPGRTFPVDVMF--------SKNTCEDYVESAVKQALQVHLTPNEGDMLIFMPGQEDIEVTCEVL 762
            ||||.:||...|        .:||.  |:::.||..:.:||....||:|:|:.||.:||.:||:|
  Rat   230 IPGRLYPVREKFCNLIGPRDRENTA--YIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELL 292

  Fly   763 EERLAEID--------NAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGI 819
            .:....:|        ....|.|||.|..:.:|.|.:||.....|:||||::|||:.||||:|||
  Rat   293 FQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGI 357

  Fly   820 IYVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALT 884
            .||:|.|:.|...:|||:|:|.|::.|||::.|.|||||||||..|:.:|:|::..:...:....
  Rat   358 RYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHV 422

  Fly   885 VPEIQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMA 949
            :|||:||:|.:.||.||.|.:.|:::|.::|||.:..||.:|.||:...|:|.:|.:|.||..|.
  Rat   423 IPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMV 487

  Fly   950 EFPLDPPQCQMLIVACRMGCSAEVLIIVSMLSVPSIFYRPKGREDEADGVREKFQRPE-----SD 1009
            ||||.|.....:|.|..:.|...:|.|.:||||.::|.||...|.:.:..::..:...     :|
  Rat   488 EFPLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQKHRELAAKAGGFND 552

  Fly  1010 HLTYLNVYQQWRQNNYSSTWCNEHFIHIKAMRKVREVRQQLKDI---MTQQNLSVISCGIDW--- 1068
            ..|...:::|.:.:...::||.:|:||.:.:.....|..||:::   :.||:        |:   
  Rat   553 FATLAVIFEQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQS--------DFPRE 609

  Fly  1069 -------DIVRKCICSAYFYQAARLKGIGEYVNLRT-------GMPCHLHPTSALYGLGTTPDYV 1119
                   :::|:|:|:.||...|| :.:|     ||       |.|.|:||:|||:...|..:::
  Rat   610 TFEGPKHEVLRRCLCAGYFKNVAR-RSVG-----RTFCTMDGRGSPVHIHPSSALHEQETKLEWI 668

  Fly  1120 VYHELIMTAKEYMQCATAVDGYWLAELGPMFFSV----------KESGRSGREK--KKQAAEHLK 1172
            ::||:::|.|.|.:....:...|:.:|.|....:          :|.....|.|  .|:..:.||
  Rat   669 IFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHELNAHDLSSVARREMRDDARRKWTNKENVKQLK 733

  Fly  1173 E-MEEQMLKAQHEMEERKQQAAEREEQLATKQE 1204
            : :.:::||......:.|..:..|...|..||:
  Rat   734 DGISKEVLKKMQRRNDDKSISDARARFLERKQQ 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 103/193 (53%)
DEXDc 551..689 CDD:238005 82/142 (58%)
HELICc 722..870 CDD:238034 66/155 (43%)
HA2 932..1014 CDD:214852 27/86 (31%)
OB_NTP_bind 1048..1148 CDD:285018 31/119 (26%)
Dhx40NP_001005873.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..53 4/17 (24%)
HrpA 51..750 CDD:224557 269/714 (38%)
DEAH box 173..176 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D113216at33208
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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