DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)G0007 and cdc28

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_595686.2 Gene:cdc28 / 2540707 PomBaseID:SPBC19C2.01 Length:1055 Species:Schizosaccharomyces pombe


Alignment Length:1054 Identity:393/1054 - (37%)
Similarity:582/1054 - (55%) Gaps:132/1054 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 GRDRDRDRSMSERSVHT-----PREPGTPGGS-------SGGI-----SNSSWD--------DED 238
            |.|.| |.::.| ..||     |||...|..:       ..||     .|||:|        :..
pombe    47 GMDGD-DPAVKE-FAHTLYARIPREGSRPKENYNARKKKEQGILQMERLNSSYDLLIEPQSHETP 109

  Fly   239 GEFGQRKSDWDMPTPR----RHGNKSGDW------SVRSGGSRRNHGRQDDTVRPT-PAHRYNQW 292
            |:..::||  ...||:    |......:|      .|..|.:  :|..::|:|... ..|.|.: 
pombe   110 GKPLKKKS--RSKTPKREIARRQRDEDEWESDEYEEVVDGSA--SHPIEEDSVSTDFQNHDYEK- 169

  Fly   293 AHGRKRSGATPWGEDPESLDL--------WEEEQRRLDREWYNIDEGYDDENNPFG--------- 340
                        ..|||:..|        :||..||.|.| ...:|..:|.::.|.         
pombe   170 ------------SSDPETERLNDLREREEFEERLRRKDLE-AATNEFVEDYSSKFSSEELALRKL 221

  Fly   341 GPNSEYFRKREEQLEQKRTKRI---SAQQ-----RQNNRDNELWERNRMLTSGVVTLISVNDDFD 397
            ..:.|.:||...:|.:|..::.   .|||     |:..||.|.......||...:..:....:..
pombe   222 ADDPESWRKLASELRKKSRQQYLKPRAQQQLEILRREIRDEEQLFAGEKLTQAEIRELEKKKELL 286

  Fly   398 EEALERVHLLVHHIIPPFLDGRIVFTKQPEPVVPVKDPTSDMALL--ARKGSALVRNYREQKERR 460
            ..|.||..|                .||.......:|..::...|  .||...|.:.|::..|..
pombe   287 RIAEERQRL----------------EKQATEYQMPEDYFTEQGKLDRKRKEEVLYQRYKDSNEGE 335

  Fly   461 K-------AQKKHWELSGTKLGNIMGVQRPQDEDDMRFD---KEKDKADYRKDQKFADHMRDQDT 515
            :       |:::.||........:..........:.:||   .|..:.|:..|.|.:.. ...||
pombe   336 QNEVTMGAAEQQRWEAQQINKALLFDQNEWLPPGEKQFDFVFDESQQIDFLLDTKLSAE-NPVDT 399

  Fly   516 GGKSDFSRKKTISEQRRFLPVFASRQELLNVIRENSVIIIVGETGSGKTTQLTQYLHEDGYSK-R 579
            ...:|...:|::...|:.|||:..:.:||..|.|..|::||.||||||||||.|:|||.||:| .
pombe   400 DKMTDVKVEKSLESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGN 464

  Fly   580 GMIGCTQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSERTVIKYMTDGILLRESLRDPE 644
            ..|.|||||||||||||.||:.|||.:||::|||:||||:.|||:|||||:|||:||||.|.:|:
pombe   465 KKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPD 529

  Fly   645 LDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSSKFATFFGNVPTFTIPGR 709
            |.|||.||:||||||:|.||:||||:::|...|.|||::::|||:|:.||:.:|...|.|.:|||
pombe   530 LASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGR 594

  Fly   710 TFPVDVMFSKNTCEDYVESAVKQALQVHLTPNEGDMLIFMPGQEDIEV-------TCEVLEERLA 767
            .:|||:.::.....:|:::|:...||:|.|...||:|:|:.||::||:       .|.:|.:|: 
pombe   595 RYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILGKRI- 658

  Fly   768 EIDNAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGIIYVIDSGYCKLKV 832
                 |.:.:.|||:.|||:||||||..:..|.||.|:||||||||:|:||:.:|||||:.|..:
pombe   659 -----PEIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNM 718

  Fly   833 YNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALTVPEIQRTNLANTV 897
            ||||.||::|...|.|:|:|:||:|||||.|||:.:||||:|.|.:||..:|.||||||||.|.|
pombe   719 YNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIV 783

  Fly   898 LLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMAEFPLDPPQCQMLI 962
            |||||||:.:||.|.|||.||.:.::.||..|:.||||::.|.||.|||||||||.||...:.||
pombe   784 LLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLI 848

  Fly   963 VACRMGCSAEVLIIVSML-SVPSIFYRPKGREDEADGVREKFQRPESDHLTYLNVYQQWRQNNYS 1026
            .:.:.||..|||.||||| ...|:|||||.:..|||..|..|.:|..||||.|:::.:|...::|
pombe   849 ASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFS 913

  Fly  1027 STWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISCGID-WDIVRKCICSAYFYQAARLKGIG 1090
            ..|..|:|:..|::.:.|:||.||.::..:..:.:::...: .|.::|.|.:.||..||||...|
pombe   914 YNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSG 978

  Fly  1091 E-YVNLRTGMPCHLHPTSALYGLGTTPDYVVYHELIMTAKEYMQCATAVDGYWLAELGPMFF--- 1151
            : |..:::....::||:|::  ....|..::|.||::|.|||.:..|.:...||.|:.|.:|   
pombe   979 DSYRTVKSNQTVYIHPSSSV--AEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPE 1041

  Fly  1152 SVKESGRSGREKKK 1165
            :::|..::.:..|:
pombe  1042 NIEELQKTQKRHKR 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 111/186 (60%)
DEXDc 551..689 CDD:238005 91/138 (66%)
HELICc 722..870 CDD:238034 72/154 (47%)
HA2 932..1014 CDD:214852 46/82 (56%)
OB_NTP_bind 1048..1148 CDD:285018 28/101 (28%)
cdc28NP_595686.2 RILP-like 226..>294 CDD:304877 17/67 (25%)
HrpA 389..1033 CDD:224557 309/652 (47%)
DEXDc 435..574 CDD:238005 91/138 (66%)
Helicase_C 615..749 CDD:278689 67/139 (48%)
HA2 817..901 CDD:214852 46/83 (55%)
OB_NTP_bind 923..1037 CDD:285018 33/115 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X141
TreeFam 00.000 Not matched by this tool.
54.710

Return to query results.
Submit another query.