DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0007 and prp43

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_595937.1 Gene:prp43 / 2540057 PomBaseID:SPBC16H5.10c Length:735 Species:Schizosaccharomyces pombe


Alignment Length:702 Identity:306/702 - (43%)
Similarity:448/702 - (63%) Gaps:40/702 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   517 GKSDFSRKKTIS-------EQRRFLPVFASRQELLNVIRENSVIIIVGETGSGKTTQLTQYLHED 574
            |.::|...|..|       |.||.|||:..|:|.|.:..||.:|:.|||||||||||:.|::..|
pombe    51 GPNNFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYD 115

  Fly   575 --GYSKRGMIGCTQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSERTVIKYMTDGILLR 637
              .:.....|.||||||||||||||||:||||..|||:|||.||||||:...|::||||||:|||
pombe   116 ELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLR 180

  Fly   638 ESLRDPELDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSSKFATFFGNVP 702
            |::.|..|..||.||:||||||:|:||:|.||::.:..||.|||:||.|||:|:.||..:|.:.|
pombe   181 EAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAP 245

  Fly   703 TFTIPGRTFPVDVMFSKNTCEDYVESAVKQALQVHLTPNEGDMLIFMPGQEDIEVTCE--VLE-E 764
            ...:||||:||::.:::....||:|:|::..||:|:....||:|:|:.|:|:||..|.  .|| :
pombe   246 LLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIEDACRKITLEAD 310

  Fly   765 RLAEIDNAPALSILPIYSQLPSDLQAKIFQ------KSSDGLRKCVVATNIAETSLTVDGIIYVI 823
            .|.....|..|.:.|:|..||.:.|.:||:      ||..| ||.|::|||||||||:|||:||:
pombe   311 DLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYG-RKVVISTNIAETSLTIDGIVYVV 374

  Fly   824 DSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALTVPEI 888
            |.|:.|.|:|||||.:::|.:.|||:|:|.||:||||||.||:.:||||:..::.||:..|.|||
pombe   375 DPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFRKELIEQTYPEI 439

  Fly   889 QRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMAEFPL 953
            .|:||::|||.||.||:.||:.|.:||||..:.::.:|.:|..|..||..|.||.|||:.:||||
pombe   440 LRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNYLNCLDDNGDLTPLGRKASEFPL 504

  Fly   954 DPPQCQMLIVACRMGCSAEVLIIVSMLSVPSIFYRPKGREDEADGVREKFQRPESDHLTYLNVYQ 1018
            ||....|||.:....||.|||.:.::||||::|.||......||.:|::|..|:.||||.||||.
pombe   505 DPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYH 569

  Fly  1019 QWRQNNYSSTWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISCGID----WDIVRKCICSAY 1079
            .::....::.||..||:..:|:.....||:||:..|.:|.:.:||...|    :..:|:.:.|.:
pombe   570 AYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGF 634

  Fly  1080 FYQAARLKGIGE-YVNLRTGMPCHLHPTSALYGLGTTPDYVVYHELIMTAKEYMQCATAVDGYWL 1143
            |.|.|:....|: ||.::......|||:.   ||..||::|||:|.::|.|.:::..||:...||
pombe   635 FMQVAKKSANGKNYVTMKDNQVVSLHPSC---GLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWL 696

  Fly  1144 AELGPMFFSVKESGRSGREKKKQAAEHLKEMEEQMLKAQHEMEERKQQAAER 1195
            .||.|.::.:.:            .::.||::..:.|. ::|..|.::.|.|
pombe   697 IELAPNYYDLDD------------FDNNKEVKSALQKV-YQMAARSKKNARR 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 108/187 (58%)
DEXDc 551..689 CDD:238005 85/139 (61%)
HELICc 722..870 CDD:238034 73/156 (47%)
HA2 932..1014 CDD:214852 39/81 (48%)
OB_NTP_bind 1048..1148 CDD:285018 34/104 (33%)
prp43NP_595937.1 DEXDc 80..258 CDD:214692 102/177 (58%)
DEXDc 92..232 CDD:238005 85/139 (61%)
HELICc 257..421 CDD:238034 73/164 (45%)
HA2 482..565 CDD:214852 39/82 (48%)
OB_NTP_bind 599..703 CDD:285018 35/106 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X141
TreeFam 00.000 Not matched by this tool.
54.710

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