DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0007 and rha-1

DIOPT Version :9

Sequence 1:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_495890.2 Gene:rha-1 / 174417 WormBaseID:WBGene00004355 Length:1301 Species:Caenorhabditis elegans


Alignment Length:1020 Identity:257/1020 - (25%)
Similarity:427/1020 - (41%) Gaps:220/1020 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 SSGGISNSSWDDED-------GEFGQRKSDWDMPTPRRHGNKSGDWSVRSGGSRRNHGRQDDTVR 282
            ||...::|:|.|.:       ||.|....:...|.|:    |...||  :...:||.|..:..: 
 Worm    87 SSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQ----KRFPWS--NNAYQRNEGTHEQYI- 144

  Fly   283 PTPAHRYNQWAHGRKRSGATPWGED---PESLDLWEEEQRRLDREWYNIDEGYDDENNPFGGPNS 344
                               |...|:   .|::||..|           |..|:..||:.      
 Worm   145 -------------------TQKAEEIAASETVDLKSE-----------IHGGWTMENSK------ 173

  Fly   345 EYFRKREEQLEQKRTKRISAQQRQNNRDNELWERNRMLTSGVVTLISV--------------NDD 395
               :...|.|::.|..::       |...::.|.|.:.|......|.|              |..
 Worm   174 ---KALNEFLQKMRLPQV-------NYGTKIRESNTVKTMETTAQIFVPQINKNLVGKGTGSNKK 228

  Fly   396 FDEE--ALERVHLLVHHIIPPFLDGRIVFTK---QPEPVVPV-KDPTSDMALLARKGSALVRNYR 454
            ..|.  |:..|..:.|..|.....|.|..:|   .||..:.: :|.::.:....|.....:....
 Worm   229 VSEAACAMNIVRQMFHLNIMQSYSGPIKKSKVSTLPEIAISIPEDLSTRVTEYVRSCGLELPEIN 293

  Fly   455 EQKERRKAQKKHWELSGTKL-----------GNIMGVQRPQDEDDMRFDK-EKDKADYRKDQKFA 507
            |.....:|...  .|:..||           .||......|:.:..|... :::...:...::.:
 Worm   294 ETSATPEAPTS--LLTDVKLAQFPVSEICSASNISWAPPLQNWNPWRASNIDEEPLAFMSMEQIS 356

  Fly   508 DHMRDQDTGGKSDFSRKKT---ISEQRRFLPVFASRQELLNVIRENSVIIIVGETGSGKTTQLTQ 569
            ..:.:     |.||.|.:.   |:.||..|||...|:.::..:.||.|.:|.||||.||:||:.|
 Worm   357 QRIME-----KEDFKRGEALDKITAQRGELPVAQYRENIVQTVAENRVTLIKGETGCGKSTQVAQ 416

  Fly   570 YLHE------DGYSKRGMIGCTQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSE-RTVI 627
            :|.|      :|.|...::  :||||::|:|:|:||::|...::||..||.:||:..|.. ...|
 Worm   417 FLLESFLENSNGASFNAVV--SQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSI 479

  Fly   628 KYMTDGILLRESLRDPELDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSS 692
            .:.|.|:|||  :.:..|...|.:|:||.|||.:.||.:..:|||:::...||::::.|||:|:.
 Worm   480 MFCTVGVLLR--MMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTD 542

  Fly   693 KFATFF------GNVPTFTIPGRTFPVDVMFSKNTCEDY-------------------------- 725
            .|..||      |..|..|:.||||||...:.::...:.                          
 Worm   543 LFTNFFSSIPDVGPTPVITMHGRTFPVQSFYLEDILHNLQHMPEEPDQKKRKKGGPPPPDDDEGD 607

  Fly   726 -----------------VESAVKQALQ-----------VHLTPN-------EGDMLIFMPGQEDI 755
                             :..::|.|:.           :....|       :|.:|:|:||..:|
 Worm   608 EEVDDKGRNMNILTDPSINESLKTAMSRISEKDIPFGVIEAILNDIASRGVDGAVLVFLPGWAEI 672

  Fly   756 EVTCEVLEERLAEIDNAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGII 820
            ...|..|.|. .|...|....|||::|||.|..|.|:| ....|.||.:|:|||||||:|:|.::
 Worm   673 MTLCNRLLEH-QEFGQANKYEILPLHSQLTSQEQRKVF-NHYPGKRKIIVSTNIAETSITIDDVV 735

  Fly   821 YVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYK-------D 878
            |||||...|.::|.....|........|:.|..||.|||||...|.|:.|.::.:::       .
 Worm   736 YVIDSCKAKERMYTSNNNMVHFATVWASKTNVIQRRGRAGRVRAGYAFHLCSKMRFEALDDHGTA 800

  Fly   879 ELLALTVPEIQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTT 943
            |:|.:.:.:|     |.|:.||: ||.|.......:.|||.|.::.|...|..:||||....||:
 Worm   801 EMLRIPLHQI-----ALTIKLLR-LGSVGEFLGKALQPPPYDMVVESEAVLQAMGALDRNLELTS 859

  Fly   944 LGRQMAEFPLDPPQCQMLIVACRMGCSAEVLIIVSMLSVPSIFYRPKGREDEADGVREKFQRPE- 1007
            ||:.:|..|::|...::||:...:|..:.:..:.|.:|.|:.|...:.......|.:.||...: 
 Worm   860 LGKMLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKF 924

  Fly  1008 SDHLTYLNVYQQWRQ------NNYSSTWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISCGI 1066
            |||:..::|.|.:|:      :.....:|..:.:....::.....|:||.|::..|      |..
 Worm   925 SDHVAIVSVIQGYREAVQMGASAAEREFCERYSLSNPVLKMTDGARRQLIDVLRNQ------CSF 983

  Fly  1067 DWDIVRKCICSAYFYQAARLKGIGEYVNL-RTGMPCHLHPTSALY 1110
            ..||:        |..:..:.|....:|| |:.:...|:|..|.|
 Worm   984 PEDIL--------FDISVNVNGPDRELNLMRSLLVMALYPNVAYY 1020

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 77/198 (39%)
DEXDc 551..689 CDD:238005 55/144 (38%)
HELICc 722..870 CDD:238034 56/208 (27%)
HA2 932..1014 CDD:214852 24/82 (29%)
OB_NTP_bind 1048..1148 CDD:285018 16/64 (25%)
rha-1NP_495890.2 DSRM 6..71 CDD:214634
DSRM 173..243 CDD:214634 13/85 (15%)
HrpA 337..>974 CDD:224557 186/653 (28%)
DEXDc 398..539 CDD:238005 55/144 (38%)
Helicase_C 649..739 CDD:278689 37/91 (41%)
HA2 847..931 CDD:214852 24/83 (29%)
OB_NTP_bind 971..1086 CDD:285018 16/64 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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