DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yl and Lrp10

DIOPT Version :9

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_075369.2 Gene:Lrp10 / 65107 MGIID:1929480 Length:713 Species:Mus musculus


Alignment Length:465 Identity:104/465 - (22%)
Similarity:142/465 - (30%) Gaps:174/465 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   966 PVATPNGIPLAASSPVGQESHPCQQQNGGCSHICVGE----------------GPYH-------- 1006
            |.|..:.:......|:|::|   :.....|:.:.:|.                |..|        
Mouse    32 PPAVLSEVQGTLQRPLGRDS---RSSPANCTWVILGSKDQTVTVRFQKLHLACGSEHLILHSPLQ 93

  Fly  1007 ---SICLCPAGFVYRDAGNRT--------------------------CVEALDCEFRCHSGECLT 1042
               |:|..|:|.:....||.|                          |::.   ||:|.:..|:.
Mouse    94 PPISLCEAPSGPLQLPGGNVTITYSYAGARAPMGQGFLLTYSQDWLLCLQE---EFQCLNHRCIP 155

  Fly  1043 MNHRCNGRRDCVDNSDEMNCDEE------HRRKPKVLC------------SPNQFACHSGEQCVD 1089
            ...||:|...|.|.|||..|..:      ....|.:.|            ||.    :|....|.
Mouse   156 AAQRCDGIDACGDGSDEAGCSSDPFPNLNPAPAPTLACNLTLEDFYGVFSSPG----YSHLASVS 216

  Fly  1090 KERRCDNRKDCHD--------------HSDEQH----------------CEKFDKSKKCHVHQHG 1124
            ..:.|....|.||              :.|..|                ...|...|...|... 
Mouse   217 HPQSCLWLLDPHDGRRLAVRFTALDLSYGDAVHVYDGAGPPETPRLLRSLTHFSNGKAVTVETL- 280

  Fly  1125 CDNGKCVDSSLVCDGTNDCGDNSDELLCEATSRCEPGMFQCGSGS-----------CIAGSWECD 1178
              :|:.|.|......::..|.|:   .......|.|....||.||           |.:.:..||
Mouse   281 --SGQAVVSYHTVAWSSGRGFNA---TYHVRGYCLPWDRPCGLGSGLGASENLGERCYSEAQRCD 340

  Fly  1179 GRIDCSDGSDEHDKCVHRSCPPDMQRCLLGQCLDRSLVCDGHNDCGDKSDELNCGTDSSTMNISC 1243
            |..||:||:|| :.|  ..|||                  ||..||      ..||..:|     
Mouse   341 GSWDCADGTDE-EGC--PGCPP------------------GHFPCG------AAGTPGAT----- 373

  Fly  1244 AEDQYQCTSNLKICLPSTVRCNGTTECPRGEDEADCGDVCSIYEFKCRSGRECIRREFRCDGQKD 1308
                        .|.....|||..|.|..|.||..|.. |....|:||. .:|:...:.||||.|
Mouse   374 ------------ACYLPADRCNYQTFCADGADERRCRH-CQPGNFRCRD-EKCVYETWVCDGQPD 424

  Fly  1309 CGDGSDELSC 1318
            |.|||||..|
Mouse   425 CTDGSDEWDC 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:291342
Ldl_recept_b 442..482 CDD:278487
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:278487
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:291342
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060 12/29 (41%)
LDLa 1074..1109 CDD:238060 11/76 (14%)
LDLa 1118..1152 CDD:238060 6/33 (18%)
LDLa 1157..1189 CDD:197566 14/42 (33%)
LDLa 1198..1232 CDD:238060 7/33 (21%)
LDLa 1243..1279 CDD:238060 9/35 (26%)
LDLa 1283..1318 CDD:238060 16/34 (47%)
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:291342
EGF_CA 1418..1452 CDD:214542
Lrp10NP_075369.2 CUB 35..135 CDD:238001 14/102 (14%)
LDLa 141..175 CDD:238060 13/36 (36%)
CUB 193..303 CDD:238001 19/119 (16%)
LDLa <331..354 CDD:238060 10/23 (43%)
LDLa 400..434 CDD:238060 16/34 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 566..636
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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